CAFGEN

CAFGEN code These are scripts that I used to run batch analyses of VirusFinder2 and extract info

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
Age_ART_duration_Plot.R		Age_ART_duration_Plot.R
BubblePlotBarPlotggplot.R		BubblePlotBarPlotggplot.R
Fishers test on each row		Fishers test on each row
ForestPlot_OddsRatio.R		ForestPlot_OddsRatio.R
GLM.R		GLM.R
Graphs.R		Graphs.R
Haplogrep		Haplogrep
Mantel_Haensael.R		Mantel_Haensael.R
Mitoseek_install		Mitoseek_install
OddsRatio.R		OddsRatio.R
OddsRatio_Mito.R		OddsRatio_Mito.R
Phenotype.R		Phenotype.R
Plotly.R		Plotly.R
Plotly_2.R		Plotly_2.R
README.md		README.md
Virus_Bar Graphs.R		Virus_Bar Graphs.R
Virus_Identity_Plot.R		Virus_Identity_Plot.R
batch_virusfinder.sh		batch_virusfinder.sh
extractVirusInfo.sh		extractVirusInfo.sh
install_perl_locally		install_perl_locally

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