Update README and move sarif utils into common module (#477)

### What's done:
* Update README and move sarif utils into common module

save-common/src/commonMain/kotlin/com/saveourtool/save/core/files/FileUtils.kt

@@ -217,6 +217,19 @@ fun Path.parentsWithSelf() = listOf(this) + this.parents().toList()
  */
 expect fun FileSystem.myDeleteRecursively(path: Path)
 
+/**
+ * Find a file in any of parent directories and return this directory
+ *
+ * @param path path for which ancestors should be checked
+ * @param fileName a name of the file that will be searched for
+ * @return a path to one of parent directories or null if no directory contains [fileName]
+ */
+fun FileSystem.findAncestorDirContainingFile(path: Path, fileName: String): Path? = path.parents().firstOrNull { parent ->
+    metadata(parent).isDirectory && list(parent).any {
+        it.name == fileName
+    }
+}
+
 /**
  * @return current working directory
  */

save-common/src/commonMain/kotlin/com/saveourtool/save/core/utils/SarifFileUtils.kt

@@ -0,0 +1,61 @@
+/**
+ * Utility methods to work with SARIF files.
+ */
+
+package com.saveourtool.save.core.utils
+
+import com.saveourtool.save.core.files.findAncestorDirContainingFile
+import com.saveourtool.save.core.files.fs
+import com.saveourtool.save.core.files.parents
+import com.saveourtool.save.core.plugin.PluginException
+
+import okio.FileSystem
+import okio.Path
+
+/**
+ * @return string with trimmed `file://` or `file:///`
+ */
+fun String.dropFileProtocol() = substringAfter("file://")
+    .let {
+        // It is a valid format for Windows paths to look like `file:///C:/stuff`
+        if (it[0] == '/' && it[2] == ':') it.drop(1) else it
+    }
+
+/**
+ * Make all paths in [this] collection relative to [root]
+ *
+ * @param root a common root for files in [this]
+ * @return a list of relative paths
+ */
+fun List<Path>.adjustToCommonRoot(root: Path) = map {
+    it.relativeTo(root).normalized()
+}
+
+/**
+ * Find the last parent directory containing save.toml.
+ *
+ * @param path a path to start the search
+ * @return one of parent directories
+ */
+fun FileSystem.topmostTestDirectory(path: Path): Path = path.parents().last { parent ->
+    list(parent).any { it.name == "save.toml" }
+}
+
+/**
+ * Calculate the path to sarif file; we expect, that it single for the all tests and located in one of parent directories
+ * for evaluated test files
+ *
+ * @param sarifFileName sarif file name
+ * @param anchorTestFilePath anchor file for calculating corresponding sarif file;
+ * since .sarif file expected to be the one for all test files, it could be any of test file
+ * @return path to sarif
+ * @throws PluginException in case of absence of sarif file
+ */
+fun calculatePathToSarifFile(sarifFileName: String, anchorTestFilePath: Path): Path = fs.findAncestorDirContainingFile(
+    anchorTestFilePath, sarifFileName
+)?.let {
+    it / sarifFileName
+} ?: throw PluginException(
+    "Could not find SARIF file with expected warnings/fixes for file $anchorTestFilePath. " +
+            "Please check if correct `FarningsFormat`/`FixFormat` is set (should be SARIF) and if the file is present and called `$sarifFileName`."
+)

save-plugins/fix-plugin/README.md

@@ -1,5 +1,11 @@
 ## Save fix plugin
 Plugin that runs provided executable on the initial file with a test source code and compares its output with an expected result.
+
+Fix plugin supports two types of execution: `IN_PLACE` and `SARIF`, which could be specified by `actualFixFormat` flag.
+In case of `IN_PLACE` mode, `save` will apply fixes, obtained by static analysis tool by executing it with provided configuration,
+while in `SARIF` mode, it will expect the `.sarif` file, with the list of fixes, which could be provided by `actualFixSarifFileName` flag.
+Plugin will extract all fixes from sarif and apply them to the test files. More information about sarif fix sections could be found [here](https://docs.oasis-open.org/sarif/sarif/v2.1.0/os/sarif-v2.1.0-os.html#_Toc34317881).
+
 Please note, that it is important for test resources to have specific postfixes. By the default test file it should be `Test`
 , for the file with expected result - it should be `Expected`.
 

save-plugins/fix-plugin/src/commonMain/kotlin/com/saveourtool/save/plugins/fix/FixPlugin.kt

@@ -23,6 +23,7 @@ import com.saveourtool.save.core.utils.ExecutionResult
 import com.saveourtool.save.core.utils.PathSerializer
 import com.saveourtool.save.core.utils.ProcessExecutionException
 import com.saveourtool.save.core.utils.ProcessTimeoutException
+import com.saveourtool.save.core.utils.calculatePathToSarifFile
 import com.saveourtool.save.core.utils.singleIsInstance
 
 import com.saveourtool.sarifutils.cli.adapter.SarifFixAdapter
@@ -186,10 +187,15 @@ class FixPlugin(
         testsPaths: List<Path>,
         testCopyToExpectedFilesMap: List<PathPair>,
     ): List<PathPair> {
+        val sarif = calculatePathToSarifFile(
+            sarifFileName = fixPluginConfig.actualFixSarifFileName!!,
+            // Since we have one .sarif file for all tests, just take the first of them as anchor for calculation of paths
+            anchorTestFilePath = testsPaths.first()
+        )
         // In this case fixes weren't performed by tool into the test files directly,
         // instead, there was created sarif file with list of fixes, which we will apply ourselves
         val fixedFiles = SarifFixAdapter(
-            sarifFile = fixPluginConfig.actualFixSarifFileName!!.toPath(),
+            sarifFile = sarif,
             targetFiles = testsPaths
         ).process()
 

save-plugins/fix-plugin/src/commonMain/kotlin/com/saveourtool/save/plugins/fix/FixPluginConfig.kt

@@ -82,18 +82,8 @@ data class FixPluginConfig(
         resourceNameExpectedSuffix = resourceNameExpected,
         ignoreLines = ignoreLines,
         actualFixFormat = actualFixFormat ?: ActualFixFormat.IN_PLACE,
-        actualFixSarifFileName = calculateActualFixSarifFilePath(),
+        actualFixSarifFileName = (actualFixSarifFileName ?: "save-fixes.sarif"),
     ).also {
         it.configLocation = this.configLocation
     }
-
-    // we require from sarif file to be located at the same level as corresponding save.toml
-    private fun calculateActualFixSarifFilePath(): String? = if (actualFixFormat == ActualFixFormat.SARIF) {
-        (
-                configLocation.parent!! /
-                        (actualFixSarifFileName ?: "save-fixes.sarif").toPath()
-        ).toString()
-    } else {
-        null
-    }
 }

save-plugins/warn-plugin/src/commonMain/kotlin/com/saveourtool/save/plugin/warn/sarif/SarifWarningAdapter.kt

@@ -4,6 +4,7 @@
 
 package com.saveourtool.save.plugin.warn.sarif
 
+import com.saveourtool.save.core.utils.dropFileProtocol
 import com.saveourtool.save.core.utils.isCurrentOsWindows
 import com.saveourtool.save.plugin.warn.utils.Warning
 

save-plugins/warn-plugin/src/commonMain/kotlin/com/saveourtool/save/plugin/warn/utils/WarningsExtraction.kt

@@ -8,11 +8,11 @@ package com.saveourtool.save.plugin.warn.utils
 import com.saveourtool.save.core.files.readFile
 import com.saveourtool.save.core.plugin.GeneralConfig
 import com.saveourtool.save.core.plugin.PluginException
+import com.saveourtool.save.core.utils.adjustToCommonRoot
+import com.saveourtool.save.core.utils.calculatePathToSarifFile
+import com.saveourtool.save.core.utils.topmostTestDirectory
 import com.saveourtool.save.plugin.warn.WarnPluginConfig
-import com.saveourtool.save.plugin.warn.sarif.adjustToCommonRoot
-import com.saveourtool.save.plugin.warn.sarif.findAncestorDirContainingFile
 import com.saveourtool.save.plugin.warn.sarif.toWarnings
-import com.saveourtool.save.plugin.warn.sarif.topmostTestDirectory
 
 import io.github.detekt.sarif4k.SarifSchema210
 import okio.FileSystem
@@ -114,11 +114,10 @@ internal fun collectWarningsFromSarif(
 
     // Since we have one .sarif file for all tests, just take the first of them as anchor for calculation of paths
     val anchorTestFilePath = originalPaths.first()
-    val sarif = fs.findAncestorDirContainingFile(anchorTestFilePath, sarifFileName)?.let { it / sarifFileName }
-        ?: throw PluginException(
-            "Could not find SARIF file with expected warnings for file $anchorTestFilePath. " +
-                    "Please check if correct `expectedWarningsFormat` is set and if the file is present and called `$sarifFileName`."
-        )
+    val sarif = calculatePathToSarifFile(
+        sarifFileName = sarifFileName,
+        anchorTestFilePath = anchorTestFilePath
+    )
     val topmostTestDirectory = fs.topmostTestDirectory(anchorTestFilePath)
     return Json.decodeFromString<SarifSchema210>(
         fs.readFile(sarif)

save-plugins/warn-plugin/src/commonNonJsTest/kotlin/com/saveourtool/save/plugin/warn/sarif/SarifWarningAdapterTest.kt

@@ -2,6 +2,7 @@ package com.saveourtool.save.plugin.warn.sarif
 
 import com.saveourtool.save.core.files.getWorkingDirectory
 import com.saveourtool.save.core.logging.logInfo
+import com.saveourtool.save.core.utils.adjustToCommonRoot
 import com.saveourtool.save.plugin.warn.utils.Warning
 
 import io.github.detekt.sarif4k.ArtifactLocation