GitHub - sbbi/microRNAscriptPackage: Prediction of Exogenous MicroRNAs That Can Be Transferred into Human Circulation

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commits
step3		step3
README		README
ViennaRNA-2.1.8.tar.gz		ViennaRNA-2.1.8.tar.gz
clean.sh		clean.sh
gnuplot-4.6.5.tar.gz		gnuplot-4.6.5.tar.gz
libsvm-3.18.tar.gz		libsvm-3.18.tar.gz
sampleGenerator.py		sampleGenerator.py
sampleGeneratorInitial.py		sampleGeneratorInitial.py
setup.sh		setup.sh

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Running ./setup.sh will prepare the experiment environment.
It will unpackage and compile Gnuplot, ViennaRNA, Libsvm.
Libsvm contains changes compared to the original, so it is not interchangeable.

DEPENDENCIES
GCC
python 2.7 and virtualenv

Installation has been tested on unix environments

Once successfully installed, see the step3*.slurm scripts to execute.