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How to Run mmtf-genomics on CyVerse/VICE

After clicking the Vice button, follow the steps below to launch Jupyter Lab, run your analyses, and save your results.

See also: VICE Starting JupyterLab App | VICE Webinar | Discovery Environment Guide

Register for a free account or go to log in page.
Log in with your CyVerse ID.
On the panel mmtf-genomics-vice, click Launch Analysis.
Wait for a notification to show up in to top right corner (alarm bell), then click Access your running analysis here.
The launch panel appears. It may take several minutes for the application to launch.
Jupyter Lab has launched. Double-click the mmtf-genomics folder and navigate to any of the notebooks.
Double-click on a notebook to launch it.
When finished with your work, click Refresh in the Analyses panel, then click on the 3-dot menu button on the far right. Click Complete and Save Outputs.
To cancel an analysis, click the Analyses menu button and choose cancel and delete to delete an analysis.