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| <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd"> | ||
| <!-- NewPage --> | ||
| <html lang="en"> | ||
| <head> | ||
| <!-- Generated by javadoc (1.8.0_131) on Sun Jun 25 22:44:41 PDT 2017 --> | ||
| <meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> | ||
| <title>All Classes (mmtf-spark 0.0.1-SNAPSHOT API)</title> | ||
| <meta name="date" content="2017-06-25"> | ||
| <link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style"> | ||
| <script type="text/javascript" src="script.js"></script> | ||
| </head> | ||
| <body> | ||
| <h1 class="bar">All Classes</h1> | ||
| <div class="indexContainer"> | ||
| <ul> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/AdvancedQuery.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters" target="classFrame">AdvancedQuery</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/webservices/AdvancedQueryService.html" title="class in edu.sdsc.mmtf.spark.webservices" target="classFrame">AdvancedQueryService</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/demos/AtpInteractionAnalysis.html" title="class in edu.sdsc.mmtf.spark.datasets.demos" target="classFrame">AtpInteractionAnalysis</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/BioJavaDemo.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">BioJavaDemo</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/BlastClusters.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters" target="classFrame">BlastClusters</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/CathClassificationDataset.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">CathClassificationDataset</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/ChainPropertyCalculator.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">ChainPropertyCalculator</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/ChemicalStructureQuery.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters" target="classFrame">ChemicalStructureQuery</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsAlternativeLocations.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsAlternativeLocations</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsDnaChain.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsDnaChain</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsDProteinChain.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsDProteinChain</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsDSaccharideChain.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsDSaccharideChain</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsGroup.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsGroup</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsLProteinChain.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsLProteinChain</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsPolymerChainType.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsPolymerChainType</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsRnaChain.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsRnaChain</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ContainsSequenceRegex.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ContainsSequenceRegex</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/demos/CreateRepresentativeSet.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters.demos" target="classFrame">CreateRepresentativeSet</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/demos/CustomReportDemo.html" title="class in edu.sdsc.mmtf.spark.datasets.demos" target="classFrame">CustomReportDemo</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/CustomReportQuery.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters" target="classFrame">CustomReportQuery</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/CustomReportService.html" title="class in edu.sdsc.mmtf.spark.datasets" target="classFrame">CustomReportService</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/DatasetBalancer.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">DatasetBalancer</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/DatasetClassifier.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">DatasetClassifier</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/DatasetRegressor.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">DatasetRegressor</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/demos/DownloadMmtfFiles.html" title="class in edu.sdsc.mmtf.spark.io.demos" target="classFrame">DownloadMmtfFiles</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/utils/DsspSecondaryStructure.html" title="enum in edu.sdsc.mmtf.spark.utils" target="classFrame">DsspSecondaryStructure</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/ExperimentalMethods.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">ExperimentalMethods</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/FileTest.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">FileTest</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterByExperimentalMethods.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterByExperimentalMethods</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterByGroups.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterByGroups</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterByPolymerChainType.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterByPolymerChainType</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterByResolution.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterByResolution</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterByRFree.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterByRFree</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterBySequenceRegex.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterBySequenceRegex</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterExclusivelyByLProteins.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterExclusivelyByLProteins</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/FilterProteinDnaComplexes.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">FilterProteinDnaComplexes</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/demos/FlatMapChains.html" title="class in edu.sdsc.mmtf.spark.mappers.demos" target="classFrame">FlatMapChains</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/FullToReducedSequenceFile.html" title="class in edu.sdsc.mmtf.spark.io" target="classFrame">FullToReducedSequenceFile</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/GroupInteractionExtractor.html" title="class in edu.sdsc.mmtf.spark.datasets" target="classFrame">GroupInteractionExtractor</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/demos/InteractionAnalysisAdvanced.html" title="class in edu.sdsc.mmtf.spark.datasets.demos" target="classFrame">InteractionAnalysisAdvanced</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/demos/InteractionAnalysisSimple.html" title="class in edu.sdsc.mmtf.spark.datasets.demos" target="classFrame">InteractionAnalysisSimple</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/IsMonomerChain.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">IsMonomerChain</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/JavaRDDToDataset.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">JavaRDDToDataset</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/demos/MapReduceExample.html" title="class in edu.sdsc.mmtf.spark.mappers.demos" target="classFrame">MapReduceExample</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/demos/MapToBioJava.html" title="class in edu.sdsc.mmtf.spark.mappers.demos" target="classFrame">MapToBioJava</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/demos/MapToTuple4.html" title="class in edu.sdsc.mmtf.spark.mappers.demos" target="classFrame">MapToTuple4</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/MmtfReader.html" title="class in edu.sdsc.mmtf.spark.io" target="classFrame">MmtfReader</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/MmtfRfreeFilter.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">MmtfRfreeFilter</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/MmtfStructureDemo.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">MmtfStructureDemo</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/MmtfStructureReader.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">MmtfStructureReader</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/MmtfWriter.html" title="class in edu.sdsc.mmtf.spark.io" target="classFrame">MmtfWriter</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/NotFilter.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">NotFilter</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/demos/NotFilterExample.html" title="class in edu.sdsc.mmtf.spark.filters.demos" target="classFrame">NotFilterExample</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/OrFilter.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">OrFilter</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/demos/PdbIdCaseCheck.html" title="class in edu.sdsc.mmtf.spark.io.demos" target="classFrame">PdbIdCaseCheck</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/PolymerComposition.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">PolymerComposition</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/PolymerSequenceExtractor.html" title="class in edu.sdsc.mmtf.spark.datasets" target="classFrame">PolymerSequenceExtractor</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/demos/PolyPeptideChainStatistics.html" title="class in edu.sdsc.mmtf.spark.mappers.demos" target="classFrame">PolyPeptideChainStatistics</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/demos/ProteinFoldDatasetCreator.html" title="class in edu.sdsc.mmtf.spark.ml.demos" target="classFrame">ProteinFoldDatasetCreator</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/demos/ReadMmtfFull.html" title="class in edu.sdsc.mmtf.spark.io.demos" target="classFrame">ReadMmtfFull</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/demos/ReadMmtfReduced.html" title="class in edu.sdsc.mmtf.spark.io.demos" target="classFrame">ReadMmtfReduced</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/ReadRawMmtf.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">ReadRawMmtf</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/ReducedEncoderNewTest.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">ReducedEncoderNewTest</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/Resolution.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">Resolution</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/Rfree.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">Rfree</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/Rwork.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">Rwork</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/filters/SecondaryStructure.html" title="class in edu.sdsc.mmtf.spark.filters" target="classFrame">SecondaryStructure</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/datasets/SecondaryStructureExtractor.html" title="class in edu.sdsc.mmtf.spark.datasets" target="classFrame">SecondaryStructureExtractor</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/SequenceSimilarity.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters" target="classFrame">SequenceSimilarity</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/SequenceWord2Vector.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">SequenceWord2Vector</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/ShapeTypeDemo.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">ShapeTypeDemo</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/SparkMultiClassClassifier.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">SparkMultiClassClassifier</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/ml/SparkRegressor.html" title="class in edu.sdsc.mmtf.spark.ml" target="classFrame">SparkRegressor</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/utils/StructureToAllInteractions.html" title="class in edu.sdsc.mmtf.spark.utils" target="classFrame">StructureToAllInteractions</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/StructureToBioJava.html" title="class in edu.sdsc.mmtf.spark.mappers" target="classFrame">StructureToBioJava</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/StructureToInteractingResidues.html" title="class in edu.sdsc.mmtf.spark.mappers" target="classFrame">StructureToInteractingResidues</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/StructureToPolymerChains.html" title="class in edu.sdsc.mmtf.spark.mappers" target="classFrame">StructureToPolymerChains</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/mappers/StructureToPolymerSequences.html" title="class in edu.sdsc.mmtf.spark.mappers" target="classFrame">StructureToPolymerSequences</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/analysis/TraverseStructureHierarchy.html" title="class in edu.sdsc.mmtf.spark.analysis" target="classFrame">TraverseStructureHierarchy</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/WebserviceChainDemo.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">WebserviceChainDemo</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/incubator/WebserviceDemo.html" title="class in edu.sdsc.mmtf.spark.incubator" target="classFrame">WebserviceDemo</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/WildType.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters" target="classFrame">WildType</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/rcsbfilters/demos/WildTypeQuery.html" title="class in edu.sdsc.mmtf.spark.rcsbfilters.demos" target="classFrame">WildTypeQuery</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/demos/WriteMmtfCustom.html" title="class in edu.sdsc.mmtf.spark.io.demos" target="classFrame">WriteMmtfCustom</a></li> | ||
| <li><a href="edu/sdsc/mmtf/spark/io/demos/WriteMmtfSubset.html" title="class in edu.sdsc.mmtf.spark.io.demos" target="classFrame">WriteMmtfSubset</a></li> | ||
| </ul> | ||
| </div> | ||
| </body> | ||
| </html> |
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