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bullet points will hopefully display with sphinx
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sblunt committed Jul 21, 2021
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Expand Up @@ -31,10 +31,10 @@ create an `issue on GitHub <https://github.com/sblunt/orbitize/issues>`_.
Attribution:
++++++++++++

- If you use ``orbitize`` in your work, please cite `Blunt et al (2019) <https://ui.adsabs.harvard.edu/abs/2019arXiv191001756B/abstract>`_.
- If you use the OFTI algorithm, please also cite `Blunt et al (2017) <https://ui.adsabs.harvard.edu/#abs/2017AJ....153..229B/abstract>`_.
- If you use the Affine-invariant MCMC algorithm from ``emcee``, please also cite `Foreman-Mackey et al (2013) <https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F/abstract>`_.
- If you use the parallel-tempered Affine-invariant MCMC algorithm from ``ptemcee``, please also cite `Vousden et al (2016) <https://ui.adsabs.harvard.edu/abs/2016MNRAS.455.1919V/abstract>`_.
* If you use ``orbitize`` in your work, please cite `Blunt et al (2019) <https://ui.adsabs.harvard.edu/abs/2019arXiv191001756B/abstract>`_.
* If you use the OFTI algorithm, please also cite `Blunt et al (2017) <https://ui.adsabs.harvard.edu/#abs/2017AJ....153..229B/abstract>`_.
* If you use the Affine-invariant MCMC algorithm from ``emcee``, please also cite `Foreman-Mackey et al (2013) <https://ui.adsabs.harvard.edu/abs/2013PASP..125..306F/abstract>`_.
* If you use the parallel-tempered Affine-invariant MCMC algorithm from ``ptemcee``, please also cite `Vousden et al (2016) <https://ui.adsabs.harvard.edu/abs/2016MNRAS.455.1919V/abstract>`_.



Expand Down Expand Up @@ -64,167 +64,167 @@ In joining our team, we ask that you read and (optionally) suggest changes to th

**Some major planned updates:**

- fit Gaia astrometry
- marginalize over instrumental uncertainties
* fit Gaia astrometry
* marginalize over instrumental uncertainties

Changelog:
++++++++++

**1.14.5 (2021-07-20)**

- Addressed issue #177, giving `Results` and `Sampler` classes a parameter label array (@sblunt)
- Fixed a bug that was causing RA/Dec data points to display wrong in orbit plots (@sblunt)
* Addressed issue #177, giving `Results` and `Sampler` classes a parameter label array (@sblunt)
* Fixed a bug that was causing RA/Dec data points to display wrong in orbit plots (@sblunt)

**1.14.4 (2021-06-18)**

- Bugfix for issue #234 (@semaphoreP, @adj-smith)
* Bugfix for issue #234 (@semaphoreP, @adj-smith)

**1.13.3 (2021-06-07)**

- Add codeastro mode to pytest that prints out a SECRET CODE if tests pass omgomg (@semaphoreP)
* Add codeastro mode to pytest that prints out a SECRET CODE if tests pass omgomg (@semaphoreP)

**1.15.2 (2021-05-11)**

- Fixed backwards-compatibility bug with version numbers and saving/loading (@semaphoreP, @wbalmer)
* Fixed backwards-compatibility bug with version numbers and saving/loading (@semaphoreP, @wbalmer)

**1.15.1 (2021-03-29)**

- Fixed bug where users with Results objects from v<14.0 couldn't load using v>=14.0 (@semaphoreP, @wbalmer)
- Fixed order of Axes objects in Advanced Plotting tutorial (@wbalmer, @sblunt)
* Fixed bug where users with Results objects from v<14.0 couldn't load using v>=14.0 (@semaphoreP, @wbalmer)
* Fixed order of Axes objects in Advanced Plotting tutorial (@wbalmer, @sblunt)

**1.15.0 (2021-02-23)**

- Handle covariances in input astrometry (@semaphoreP)
* Handle covariances in input astrometry (@semaphoreP)

**1.14.0 (2021-02-12)**

- Version number now saved in results object (@hgallamore)
- Joint RV+astrometry fits can now handle different RV instruments! (@vighnesh-nagpal, @Rob685, @lhirsch238)
- New “FAQ” section added to docs (@semaphoreP)
- Bugfix for multiplanet code (@semaphoreP) introduced in PR #192
- now you can pass a preexisting Figure object into ``results.plot_orbit`` (@sblunt)
- colorbar label is now "Epoch [year]" (@sblunt)
- corner plot maker can now handle fixed parameters without crashing (@sblunt)
* Version number now saved in results object (@hgallamore)
* Joint RV+astrometry fits can now handle different RV instruments! (@vighnesh-nagpal, @Rob685, @lhirsch238)
* New “FAQ” section added to docs (@semaphoreP)
* Bugfix for multiplanet code (@semaphoreP) introduced in PR #192
* now you can pass a preexisting Figure object into ``results.plot_orbit`` (@sblunt)
* colorbar label is now "Epoch [year]" (@sblunt)
* corner plot maker can now handle fixed parameters without crashing (@sblunt)

**1.13.1 (2021-01-25)**

- ``compute_sep`` in ``radvel_utils`` submodule now returns ``mp`` (@sblunt)
- ``astropy._erfa`` was deprecated (now in separate package). Dependencies updated. (@sblunt)
* ``compute_sep`` in ``radvel_utils`` submodule now returns ``mp`` (@sblunt)
* ``astropy._erfa`` was deprecated (now in separate package). Dependencies updated. (@sblunt)

**1.13.0 (2020-11-8)**

- Added ``radvel-utils`` submodule which allows users to calculate projected separation posteriors given RadVel chains (@sblunt)
- Fixed a total mass/primary mass mixup bug that was causing problems for equal-mass binary RV+astrometry joint fits (@sblunt)
- Bugfix for multiplanet perturbation approximation: now only account for inner planets only when computing perturbations (@semaphoreP)
* Added ``radvel-utils`` submodule which allows users to calculate projected separation posteriors given RadVel chains (@sblunt)
* Fixed a total mass/primary mass mixup bug that was causing problems for equal-mass binary RV+astrometry joint fits (@sblunt)
* Bugfix for multiplanet perturbation approximation: now only account for inner planets only when computing perturbations (@semaphoreP)

**1.12.1 (2020-9-6)**

- ``tau_ref_epoch`` is now set to Jan 1, 2020 throughout the code (@semaphoreP)
- ``restrict_angle_ranges`` keyword now works as expected for OFTI (@sblunt)
* ``tau_ref_epoch`` is now set to Jan 1, 2020 throughout the code (@semaphoreP)
* ``restrict_angle_ranges`` keyword now works as expected for OFTI (@sblunt)

**1.12.0 (2020-8-28)**

- Compatibility with ``emcee>=3`` (@sblunt)
* Compatibility with ``emcee>=3`` (@sblunt)

**1.11.3 (2020-8-20)**

- Save results section of OFTI tutorial now current (@rferrerc)
- Modifying MCMC initial positions tutorial documentation now uses correct orbital elements (@rferrerc)
* Save results section of OFTI tutorial now current (@rferrerc)
* Modifying MCMC initial positions tutorial documentation now uses correct orbital elements (@rferrerc)

**1.11.2 (2020-8-10)**

- Added transparency option for plotting MCMC chains (@sofiacovarrubias)
- Removed some redundant code (@MissingBrainException)
* Added transparency option for plotting MCMC chains (@sofiacovarrubias)
* Removed some redundant code (@MissingBrainException)

**1.11.1 (2020-6-11)**

- Fixed a string formatting bug causing corner plots to fail for RV+astrometry fits
* Fixed a string formatting bug causing corner plots to fail for RV+astrometry fits

**1.11.0 (2020-4-14)**

- Multiplanet support!
- Changes to directory structure of sample data files
- Fixed a bug that was causing corner plots to fail on loaded results objects
* Multiplanet support!
* Changes to directory structure of sample data files
* Fixed a bug that was causing corner plots to fail on loaded results objects

**1.10.0 (2020-3-6)**

- Joint RV + relative astrometry fitting capabilities!
- New tutorial added
* Joint RV + relative astrometry fitting capabilities!
* New tutorial added

**1.9.0 (2020-1-24)**

- Require astropy>=4
- Minor documentation upgrades
- **This is the first Python 2 noncompliant version**
* Require astropy>=4
* Minor documentation upgrades
* **This is the first Python 2 noncompliant version**

**1.8.0 (2020-1-24)**

- Bugfixes related to numpy and astropy upgrades
- **This is the last version that will support Python 2**
* Bugfixes related to numpy and astropy upgrades
* **This is the last version that will support Python 2**

**1.7.0 (2019-11-10)**

- Default corner plots now display angles in degrees instead of radians
- Add a keyword for plotting orbits that cross PA=360
* Default corner plots now display angles in degrees instead of radians
* Add a keyword for plotting orbits that cross PA=360

**1.6.0 (2019-10-1)**

- Mikkola solver now implemented in C-Kepler solver
- Fixed a bug with parallel processing for OFTI
- Added orbit vizualisation jupyter nb show-me-the-orbit to docs/tutorials
- New methods for viewing/chopping MCMC chains
- Require ``emcee<3`` for now
* Mikkola solver now implemented in C-Kepler solver
* Fixed a bug with parallel processing for OFTI
* Added orbit vizualisation jupyter nb show-me-the-orbit to docs/tutorials
* New methods for viewing/chopping MCMC chains
* Require ``emcee<3`` for now

**1.5.0 (2019-9-9)**

- Parallel processing for OFTI.
- Fixed a bug converting errors in RA/Dec to sep/PA in OFTI.
- OFTI and MCMC now both return likelihood, whereas before one returned posterior.
- Updated logic for restricting Omega and omega bounds.
* Parallel processing for OFTI.
* Fixed a bug converting errors in RA/Dec to sep/PA in OFTI.
* OFTI and MCMC now both return likelihood, whereas before one returned posterior.
* Updated logic for restricting Omega and omega bounds.

**1.4.0 (2019-7-15)**

- API change to lay the groundwork for dynamical mass calculation.
- JeffreysPrior -> LogUniformPrior
- New tutorials.
- Added some informative error messages for input tables.
- Bugfixes.
* API change to lay the groundwork for dynamical mass calculation.
* JeffreysPrior -> LogUniformPrior
* New tutorials.
* Added some informative error messages for input tables.
* Bugfixes.


**1.3.1 (2019-6-19)**

- Bugfix for RA/Dec inputs to the OFTI sampler (Issue #108).
* Bugfix for RA/Dec inputs to the OFTI sampler (Issue #108).

**1.3.0 (2019-6-4)**

- Add ability to customize date of tau definition.
- Sampler now saves choice of tau reference with results.
- Default tau value is now Jan 1, 2020.
- Small bugfixes.
* Add ability to customize date of tau definition.
* Sampler now saves choice of tau reference with results.
* Default tau value is now Jan 1, 2020.
* Small bugfixes.

**1.2.0 (2019-3-21)**

- Remove unnecessary ``astropy`` date warnings.
- Add custom likelihood function.
- Add progress bar for ``ptemcee`` sampler.
- Add customizable color axis for orbit plots.
- Small bugfixes.
* Remove unnecessary ``astropy`` date warnings.
* Add custom likelihood function.
* Add progress bar for ``ptemcee`` sampler.
* Add customizable color axis for orbit plots.
* Small bugfixes.

**1.1.0 (2019-1-6)**

- Add sep/PA panels to orbit plot.
- ``GaussianPrior`` now operates on only positive numbers by default.
* Add sep/PA panels to orbit plot.
* ``GaussianPrior`` now operates on only positive numbers by default.


**1.0.2 (2018-12-4)**

- Expand input reading functionality.
- Bugfixes for MCMC.
* Expand input reading functionality.
* Bugfixes for MCMC.

**1.0.1 (2018-11-20)**

- Bugfix for building on CentOS machines.
* Bugfix for building on CentOS machines.

**1.0.0 (2018-10-30)**

- Initial release.
* Initial release.

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