0.14.0 dev #55
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0.14.0 dev #55
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* Add new CNV calls for CYP2A6: ``Hybrid2Hom``, ``Hybrid4``, ``Tandem``.
* Add new CNV call for CYP2E1: ``Multiplication``.
* Add a new CNV call for SLC22A2: ``PartialDuplication``.
* Add a new CNV call for SULT1A1: ``DeletionHom``.
* Fix minor error in ``gene-table.csv``. Two control genes EGFR and VDR incorrectly had ``TRUE`` for ``Variants`` column. They were changed to ``FALSE``.
* Add new optional arguments ``--target-genes`` and ``--var-genes`` to :command:`create-regions-bed` command.
* Change the three paralogs in ``gene-table.csv`` (CYP2A7, CYP2B7, and CYP2D7) to have ``FALSE`` for ``SV`` column.
* :issue:`53` Update CYP2B6\*17 variants to have synonyms. Update :meth:`api.core.get_variant_synonyms` and :meth:`api.utils.predict_alleles` methods to allow mapping of single variant to multiple synonyms.
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Apr 2, 2022
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