CMake fails with ParMetis 4

[platipodium]

Something's still awkward with the build system, notably the inclusion of the new ParMetis4. Prior to this change, my build succeeded with

cmake ../schism/src -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local

This yields an error in ParMetis, which I tracked down to

cmake ../schism/src/ParMetis-4.0.3/metis -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local

Which gives the error

CMake Error at /Volumes/Kea/devel/schism/build/CMakeFiles/CMakeTmp/CMakeLists.txt:13 (add_executable):
  Cannot find source file:

    GKlib/conf/check_thread_storage.c

  Tried extensions .c .C .c++ .cc .cpp .cxx .cu .m .M .mm .h .hh .h++ .hm
  .hpp .hxx .in .txx


CMake Error at /Volumes/Kea/devel/schism/build/CMakeFiles/CMakeTmp/CMakeLists.txt:13 (add_executable):
  No SOURCES given to target: cmTC_05be2


CMake Error at GKlib/GKlibSystem.cmake:110 (try_compile):
  Failed to generate test project build system.
Call Stack (most recent call first):
  CMakeLists.txt:20 (include)


-- Configuring incomplete, errors occurred!

[platipodium]

For completeness: when trying to compile SCHISM (as before), I get a similar error

cmake ../schism/src -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local

### Adding enabled libraries to project
CMake Error at ParMetis-4.0.3/CMakeLists.txt:28 (include):
  include could not find load file:

    /metis/GKlib/GKlibSystem.cmake


CMake Error at ParMetis-4.0.3/CMakeLists.txt:38 (add_subdirectory):
  add_subdirectory given source "/metis/libmetis" which is not an existing
  directory.

All with today's version (11 May) 6f15b0d

[platipodium]

Solved by adding the ParMetis CMake flags to the global build. So now you can build ParMetis and SCHISM in one step again (note my locally specific location of build and netcdf dirs and adjust accordingly ):

cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make pschism

[josephzhang8]

Thx Carsten. I noticed u were not using the ‘standard’ cmake interface with SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS should be speicified in SCHISM.local.<mc>

…

-Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Carsten Lemmen <notifications@github.com> Sent: Tuesday, May 12, 2020 5:56 AM To: schism-dev/schism <schism@noreply.github.com> Cc: Subscribed <subscribed@noreply.github.com> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) Solved by adding the ParMetis CMake flags to the global build. So now you can build ParMetis and SCHISM in one step again (note my locally specific location of build and netcdf dirs and adjust accordingly ): cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make pschism — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>.

[jreniel]

These paths should probably be populated without having to invoke a separate file, since the path to the parmetis source code is fixed.

…

On 5/12/20 9:22 AM, Joseph Zhang wrote: Thx Carsten. I noticed u were not using the ‘standard’ cmake interface with SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS should be speicified in SCHISM.local.<mc> -Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Carsten Lemmen ***@***.***> Sent: Tuesday, May 12, 2020 5:56 AM To: schism-dev/schism ***@***.***> Cc: Subscribed ***@***.***> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) Solved by adding the ParMetis CMake flags to the global build. So now you can build ParMetis and SCHISM in one step again (note my locally specific location of build and netcdf dirs and adjust accordingly ): cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make pschism — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEXYQTWBG5LPFJRJMCWEHL3RRFERXANCNFSM4M6RGT4A>.

[josephzhang8]

Hi Jaime: At the moment we are not pointing to parmetis web site; we just download and include it inside schism repo so the path is different at different users site.

-Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Jaime R Calzada <notifications@github.com> Sent: Tuesday, May 12, 2020 9:43 AM To: schism-dev/schism <schism@noreply.github.com> Cc: Y. Joseph Zhang <yjzhang@vims.edu>; Comment <comment@noreply.github.com> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) These paths should probably be populated without having to invoke a separate file, since the path to the parmetis source code is fixed.

On 5/12/20 9:22 AM, Joseph Zhang wrote: Thx Carsten. I noticed u were not using the ‘standard’ cmake interface with SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS should be speicified in SCHISM.local.<mc> -Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Carsten Lemmen ***@***.***> Sent: Tuesday, May 12, 2020 5:56 AM To: schism-dev/schism ***@***.***> Cc: Subscribed ***@***.***> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) Solved by adding the ParMetis CMake flags to the global build. So now you can build ParMetis and SCHISM in one step again (note my locally specific location of build and netcdf dirs and adjust accordingly ): cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make pschism — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEXYQTWBG5LPFJRJMCWEHL3RRFERXANCNFSM4M6RGT4A>.

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[jreniel]

The relative path is fixed. To me, the standard way of using CMake is by calling it directly, without calling external configuration files. These are useful on some systems, but is not the general standard way.

…

On 5/12/20 9:45 AM, Joseph Zhang wrote: Hi Jaime: At the moment we are not pointing to parmetis web site; we just download and include it inside schism repo so the path is different at different users site. -Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Jaime R Calzada ***@***.***> Sent: Tuesday, May 12, 2020 9:43 AM To: schism-dev/schism ***@***.***> Cc: Y. Joseph Zhang ***@***.***>; Comment ***@***.***> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) These paths should probably be populated without having to invoke a separate file, since the path to the parmetis source code is fixed. On 5/12/20 9:22 AM, Joseph Zhang wrote: > Thx Carsten. > I noticed u were not using the ‘standard’ cmake interface with > SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS > should be speicified in SCHISM.local.<mc> > > -Joseph > > Y. Joseph Zhang > Web: schism.wiki > Office: 804 684 7466 > > From: Carsten Lemmen ***@***.***> > Sent: Tuesday, May 12, 2020 5:56 AM > To: schism-dev/schism ***@***.***> > Cc: Subscribed ***@***.***> > Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) > > > Solved by adding the ParMetis CMake flags to the global build. So now > you can build ParMetis and SCHISM in one step again (note my locally > specific location of build and netcdf dirs and adjust accordingly ): > > cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc > -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc > -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local > -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib > -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make > pschism > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on > GitHub<#15 (comment)>, > or > unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>. > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#15 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AEXYQTWBG5LPFJRJMCWEHL3RRFERXANCNFSM4M6RGT4A>. > — You are receiving this because you commented. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZZRFPI7OSLJQPT3Y3DRRFG5FANCNFSM4M6RGT4A>. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEXYQTRUYAUFTUGFMUSN2P3RRFHH5ANCNFSM4M6RGT4A>.

[platipodium]

I suggest to make this conditionally dependent on system availability of ParMetis.  If there is a system ParMetis (which could even be pointed to by an env variable, CMake build system should choose that one, if not, it should chose the (fixed path) one shipped within SCHISM. Cheers, Carsten

…

The relative path is fixed. To me, the standard way of using CMake is by calling it directly, without calling external configuration files. These are useful on some systems, but is not the general standard way. On 5/12/20 9:45 AM, Joseph Zhang wrote: > Hi Jaime: > > At the moment we are not pointing to parmetis web site; we just > download and include it inside schism repo so the path is different at > different users site. > > -Joseph > > Y. Joseph Zhang > Web: schism.wiki > Office: 804 684 7466 > > From: Jaime R Calzada ***@***.***> > Sent: Tuesday, May 12, 2020 9:43 AM > To: schism-dev/schism ***@***.***> > Cc: Y. Joseph Zhang ***@***.***>; Comment > ***@***.***> > Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) > > These paths should probably be populated without having to invoke a > separate file, since the path to the parmetis source code is fixed. > > On 5/12/20 9:22 AM, Joseph Zhang wrote: > > Thx Carsten. > > I noticed u were not using the ‘standard’ cmake interface with > > SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS > > should be speicified in SCHISM.local.<mc> > > > > -Joseph > > > > Y. Joseph Zhang > > Web: schism.wiki > > Office: 804 684 7466 > > > > From: Carsten Lemmen ***@***.***> > > Sent: Tuesday, May 12, 2020 5:56 AM > > To: schism-dev/schism ***@***.***> > > Cc: Subscribed ***@***.***> > > Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) > > > > > > Solved by adding the ParMetis CMake flags to the global build. So now > > you can build ParMetis and SCHISM in one step again (note my locally > > specific location of build and netcdf dirs and adjust accordingly ): > > > > cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc > > -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc > > -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local > > -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib > > -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make > > pschism > > > > — > > You are receiving this because you are subscribed to this thread. > > Reply to this email directly, view it on > > > GitHub<#15 (comment)>, > > or > > > unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>. > > > > — > > You are receiving this because you are subscribed to this thread. > > Reply to this email directly, view it on GitHub > > <#15 (comment)>, > > or unsubscribe > > > <https://github.com/notifications/unsubscribe-auth/AEXYQTWBG5LPFJRJMCWEHL3RRFERXANCNFSM4M6RGT4A>. > > > > > — > You are receiving this because you commented. > Reply to this email directly, view it on > GitHub<#15 (comment)>, > or > unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZZRFPI7OSLJQPT3Y3DRRFG5FANCNFSM4M6RGT4A>. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <#15 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AEXYQTRUYAUFTUGFMUSN2P3RRFHH5ANCNFSM4M6RGT4A>. > — You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAUNNOLI3KMQSJTWZ4PNLBDRRFJDRANCNFSM4M6RGT4A>.

-- Dr. rer. nat. Carsten Lemmen Environmental Scientist Helmholtz Zentrum Geesthacht Centre for Materials and Coastal Research GmbH Institute for Coastal Research - Systems Analysis and Modelling Ecosystem Modeling (KSE) Max-Planck-Str.1, 21502 Geesthacht, Germany Tel.: +49 4152 87-2013 / Fax: -2020 / Secretary: -1502 Building 11, 2nd floor, room 213 https://w3w.co/builds.grubby.chewable Email: carsten.lemmen@hzg.de Internet: http://www.hzg.de Messaging: skype://platipodium or aim://platipodium Zoom: https://zoom.us/my/platipodium My email is as private as regular mail, please 'put it in an envelope' by GPG encryption with my public key id 9249e2e0. Geschäftsführer: Prof. Dr. W. A. Kaysser, Dipl.-Ing. M. Ganß Vorsitzender des Aufsichtsrates: Ministerialrat W. Kraus Amtsgericht Lübeck - HRB 285 GE USt.IDNr.: DE 135 131 669 Helmholtz-Zentrum Geesthacht Zentrum für Material- und Küstenforschung GmbH Max-Planck-Straße 1 I 21502 Geesthacht I Deutschland/Germany Geschäftsführung/Board of Management: Prof. Dr. Matthias Rehahn, Silke Simon Vorsitzender des Aufsichtsrates/Chairman of the Supervisory Board: Ministerialdirigent Dr. Herbert Zeisel Amtsgericht Lübeck HRB 285 GE (Register Court) Internet: http://www.hzg.de

[josephzhang8]

For some reason the relative path did not work for me. For Carsten’s suggestion, I still think it’s better to recompile PM using source for max compatibility, even if it’s available in the system. The compilation takes minimal amount of time anyway. Thx.

-Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Jaime R Calzada <notifications@github.com> Sent: Tuesday, May 12, 2020 10:01 AM To: schism-dev/schism <schism@noreply.github.com> Cc: Y. Joseph Zhang <yjzhang@vims.edu>; Comment <comment@noreply.github.com> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) The relative path is fixed. To me, the standard way of using CMake is by calling it directly, without calling external configuration files. These are useful on some systems, but is not the general standard way.

On 5/12/20 9:45 AM, Joseph Zhang wrote: Hi Jaime: At the moment we are not pointing to parmetis web site; we just download and include it inside schism repo so the path is different at different users site. -Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Jaime R Calzada ***@***.***> Sent: Tuesday, May 12, 2020 9:43 AM To: schism-dev/schism ***@***.***> Cc: Y. Joseph Zhang ***@***.***>; Comment ***@***.***> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) These paths should probably be populated without having to invoke a separate file, since the path to the parmetis source code is fixed. On 5/12/20 9:22 AM, Joseph Zhang wrote: > Thx Carsten. > I noticed u were not using the ‘standard’ cmake interface with > SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS > should be speicified in SCHISM.local.<mc> > > -Joseph > > Y. Joseph Zhang > Web: schism.wiki > Office: 804 684 7466 > > From: Carsten Lemmen ***@***.***> > Sent: Tuesday, May 12, 2020 5:56 AM > To: schism-dev/schism ***@***.***> > Cc: Subscribed ***@***.***> > Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) > > > Solved by adding the ParMetis CMake flags to the global build. So now > you can build ParMetis and SCHISM in one step again (note my locally > specific location of build and netcdf dirs and adjust accordingly ): > > cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc > -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc > -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local > -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib > -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make > pschism > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on > GitHub<#15 (comment)>, > or > unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>. > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#15 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AEXYQTWBG5LPFJRJMCWEHL3RRFERXANCNFSM4M6RGT4A>. > — You are receiving this because you commented. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZZRFPI7OSLJQPT3Y3DRRFG5FANCNFSM4M6RGT4A>. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEXYQTRUYAUFTUGFMUSN2P3RRFHH5ANCNFSM4M6RGT4A>.

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[jreniel]

Any way you do it is fine with me. It's just a comment. The -D options should be used when you want to switch to another version, but CMake itself should pick up by default the one shipped with SCHISM without having to manually enter the paths.

…

-J.

On 5/12/20 10:07 AM, Joseph Zhang wrote: For some reason the relative path did not work for me. For Carsten’s suggestion, I still think it’s better to recompile PM using source for max compatibility, even if it’s available in the system. The compilation takes minimal amount of time anyway. Thx. -Joseph Y. Joseph Zhang Web: schism.wiki Office: 804 684 7466 From: Jaime R Calzada ***@***.***> Sent: Tuesday, May 12, 2020 10:01 AM To: schism-dev/schism ***@***.***> Cc: Y. Joseph Zhang ***@***.***>; Comment ***@***.***> Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) The relative path is fixed. To me, the standard way of using CMake is by calling it directly, without calling external configuration files. These are useful on some systems, but is not the general standard way. On 5/12/20 9:45 AM, Joseph Zhang wrote: > Hi Jaime: > > At the moment we are not pointing to parmetis web site; we just > download and include it inside schism repo so the path is different at > different users site. > > -Joseph > > Y. Joseph Zhang > Web: schism.wiki > Office: 804 684 7466 > > From: Jaime R Calzada ***@***.***> > Sent: Tuesday, May 12, 2020 9:43 AM > To: schism-dev/schism ***@***.***> > Cc: Y. Joseph Zhang ***@***.***>; Comment > ***@***.***> > Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) > > These paths should probably be populated without having to invoke a > separate file, since the path to the parmetis source code is fixed. > > On 5/12/20 9:22 AM, Joseph Zhang wrote: > > Thx Carsten. > > I noticed u were not using the ‘standard’ cmake interface with > > SCHISM.local.<mc> and SCHISM.local.build. The full path to ParMETIS > > should be speicified in SCHISM.local.<mc> > > > > -Joseph > > > > Y. Joseph Zhang > > Web: schism.wiki > > Office: 804 684 7466 > > > > From: Carsten Lemmen ***@***.***> > > Sent: Tuesday, May 12, 2020 5:56 AM > > To: schism-dev/schism ***@***.***> > > Cc: Subscribed ***@***.***> > > Subject: Re: [schism-dev/schism] CMake fails with ParMetis 4 (#15) > > > > > > Solved by adding the ParMetis CMake flags to the global build. So now > > you can build ParMetis and SCHISM in one step again (note my locally > > specific location of build and netcdf dirs and adjust accordingly ): > > > > cmake -DCMAKE_Fortran_COMPILER=mpifort -DCMAKE_CXX_COMPILER=mpicc > > -DCMAKE_C_COMPILER=mpicc -DMPI_CXX_COMPILER=mpicc > > -DNetCDF_C_DIR=/opt/local -DNetCDF_FORTRAN_DIR=/opt/local > > -DGKLIB_PATH=../schism/src/ParMetis-4.0.3/metis/GKlib > > -DMETIS_PATH=../schism/src/ParMetis-4.0.3/metis ../schism/src && make > > pschism > > > > — > > You are receiving this because you are subscribed to this thread. > > Reply to this email directly, view it on > > > GitHub<#15 (comment)>, > > or > > > unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ2D2HTWX4W7JA4JQH3RREMMXANCNFSM4M6RGT4A>. > > > > — > > You are receiving this because you are subscribed to this thread. > > Reply to this email directly, view it on GitHub > > <#15 (comment)>, > > or unsubscribe > > > <https://github.com/notifications/unsubscribe-auth/AEXYQTWBG5LPFJRJMCWEHL3RRFERXANCNFSM4M6RGT4A>. > > > > > — > You are receiving this because you commented. > Reply to this email directly, view it on > GitHub<#15 (comment)>, > or > unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZZRFPI7OSLJQPT3Y3DRRFG5FANCNFSM4M6RGT4A>. > > — > You are receiving this because you commented. > Reply to this email directly, view it on GitHub > <#15 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/AEXYQTRUYAUFTUGFMUSN2P3RRFHH5ANCNFSM4M6RGT4A>. > — You are receiving this because you commented. Reply to this email directly, view it on GitHub<#15 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AFBKNZ3SI3OSQTJYFU7NMQTRRFJDRANCNFSM4M6RGT4A>. — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#15 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AEXYQTWCDFN3LDKLYAUKYUDRRFJ2XANCNFSM4M6RGT4A>.