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@schneebergerlab

schneebergerlab

Popular repositories

  1. syri syri Public

    Synteny and Rearrangement Identifier

    Cython 284 34

  2. plotsr plotsr Public

    Tool to plot synteny and structural rearrangements between genomes

    Python 258 27

  3. AMPRIL-genomes AMPRIL-genomes Public

    scripts for the project of seven thaliana genomes assembly

    Python 34 18

  4. findGSE findGSE Public

    findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.

    R 30 10

  5. GameteBinning GameteBinning Public

    C++ 11 3

  6. GameteBinning_tetraploid GameteBinning_tetraploid Public

    This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings

    C++ 11 1

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