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Large InDel #132

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jinshangkun opened this issue Apr 10, 2022 · 3 comments
Closed

Large InDel #132

jinshangkun opened this issue Apr 10, 2022 · 3 comments
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@jinshangkun
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Hello!
I find that when the INS/DEL length is longer than 100, the columns of Ref/Alt will not display the specific sequence . Is there any parameter for it to display specific sequence information?Thanks!

For example:
A01 201756 INS9 N . PASS END=201756;ChrB=A01;StartB=244412;EndB=244572;Parent=SYN6;VarType=ShV;DupType=

@mnshgl0110 mnshgl0110 self-assigned this Apr 11, 2022
@mnshgl0110
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Currently there is no parameter to display larger indels in VCF. But this is a good idea and I will try to add it.

@prometheusloong
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Look forward to the implementation of this feature, and i hope that the sequence cloud also display in VCF format.

@mnshgl0110
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Indel printing added 9b04c6a

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