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Inverted chromosome warning #189
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@InfiniteLaugh You need to ensure that for homologous chromosomes same strands are present in the assembly files. You can check the dotplots (generated by fixchr) to decide whether the cleaned chromosomes corresponds to same strands. If you are confident that same strands are being compared, then you can ignore the warning. |
Thank you for your immediate answer! ^_^ |
Yes, you need to rerun alignments otherwise the genomes and alignments would not match. |
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Great that it is working. Please start a new issue for other questions. |
#184 (comment)
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