# The first commit's message is:
WIP: added the functions for static tests for image data, before doing xsvs

# This is the 2nd commit message:

DOC: fixed the documentation for the funstions

# This is the 3rd commit message:

ENH: added a time bining function for integration

# This is the 4th commit message:

C: added documentation for static tests

# This is the 5th commit message:

BUG: fixed a bug in the static tests function

# This is the 6th commit message:

BUG: removed a bug in the time_bin function

# This is the 7th commit message:

ENH: added a new function to find the maximum speckle count in any image

# This is the 8th commit message:

TST: added tests to test_time_bining, test_max_counts, test_intesnity_distribution

…attern

Conflicts:
	skxray/speckle_visibility.py

API: added a seperate dir for xsvs, and move the static tests module to that

API: added new function to find the suitable center for the speckle pattern

Conflicts:
	skxray/speckle_visibility.py

API: added a seperate dir for xsvs, and move the static tests module to that

TST: start working on tests for the speckle_visibility module sttaic tests

(Negative binomial distribution, poission distribution, gamma distribution, etc ..)

DOC: fixed the documentation

DOC: fixed the documentation

ENH

DOC: fixed the documentation

ENH

BUG: fixed the bug in dict.iteritems(0 for python 3

BUG: fixed the bug for python 3 -remove the iteritems

DOC: finxed the documentation

ENH

BUG: fixed the bug in dict.iteritems(0 for python 3

BUG: fixed the bug for python 3 -remove the iteritems

BUG: changed the dict.items() back to dict.iteritems() -Problem with python 3

DOC: finxed the documentation

ENH

BUG: fixed the bug in dict.iteritems(0 for python 3

BUG: fixed the bug for python 3 -remove the iteritems

BUG: changed the dict.items() back to dict.iteritems() -Problem with python 3

DOC: changed the documentation for speckle_visibility.py

DOC: finxed the documentation

ENH

BUG: fixed the bug in dict.iteritems(0 for python 3

BUG: fixed the bug for python 3 -remove the iteritems

BUG: changed the dict.items() back to dict.iteritems() -Problem with python 3

DOC: changed the documentation for speckle_visibility.py

DOC: fixed the documentation of suitable center

DOC: finxed the documentation

ENH

BUG: fixed the bug in dict.iteritems(0 for python 3

BUG: fixed the bug for python 3 -remove the iteritems

BUG: changed the dict.items() back to dict.iteritems() -Problem with python 3

DOC: changed the documentation for speckle_visibility.py

DOC: fixed the documentation of suitable center

API: added new function for saxs_circular_average

DOC: finxed the documentation

ENH

BUG: fixed the bug in dict.iteritems(0 for python 3

BUG: fixed the bug for python 3 -remove the iteritems

BUG: changed the dict.items() back to dict.iteritems() -Problem with python 3

DOC: changed the documentation for speckle_visibility.py

DOC: fixed the documentation of suitable center

API: added new function for saxs_circular_average

TST: added test function for circular_average function to find saxs integration

TST: fixed the nx=6 in the tests for circular_average

DOC: added more documentation

DOC: added more documentation

ENH: added the pixel_size to the circular_average function

ENH: changes to the bi edges

DOC: fixed the documentationof the xsvs.py _process

BUG: fixed the bug with python 3 ( dict.iteritem() not working)
API moved the circular_average function to core.py
and the test to test_core.py

BUG: finxed the bug with python 3 in dict.values()

BUG: python 3

DOC: fixed the documentationof the xsvs.py _process

BUG: fixed the bug with python 3 ( dict.iteritem() not working)
API moved the circular_average function to core.py
and the test to test_core.py

BUG: finxed the bug with python 3 in dict.values()

BUG: python 3

TST: added tests to check the static_tests one label

DOC: fixed the documentationof the xsvs.py _process

BUG: fixed the bug with python 3 ( dict.iteritem() not working)
API moved the circular_average function to core.py
and the test to test_core.py

BUG: finxed the bug with python 3 in dict.values()

BUG: python 3

TST: added tests to check the static_tests one label

ENH: moved the circular_average function to speckle_visibility.py

ENH:  changes to documentation

TST: fixed the static_tests() and remove the unwanted parts in the core.py

TST: fixed the static_tests() and remove the unwanted parts in the core.py

BUG: added list() to dict.values) for python 3

STY: fixed with pepe8

STY: fixed with pepe8

BUG: fixed the bug with python 3 in dict.values()

BUG: python 3

STY: fixed with pepe8

BUG: fixed the bug with python 3 in dict.values()

BUG: python 3

TST: added tests to check the static_tests one label

ENH:fixed the core.py

ENH:fixed the core.py

ENH: moved the circular_average function to speckle_visibility.py

ENH:  changes to documentation

Conflicts:
	skxray/speckle_visibility/speckle_visibility.py
	skxray/tests/test_speckle_visibility.py

ENH:  changes to documentation

Conflicts:
	skxray/speckle_visibility/speckle_visibility.py
	skxray/tests/test_speckle_visibility.py

TST: fixed the static_tests() and remove the unwanted parts in the core.py

ENH:  changes to documentation

Conflicts:
	skxray/speckle_visibility/speckle_visibility.py
	skxray/tests/test_speckle_visibility.py

TST: fixed the static_tests() and remove the unwanted parts in the core.py

BUG: added list() to dict.values) for python 3

STY: fixed with pepe8

Conflicts:
	skxray/tests/test_speckle_visibility.py

STY: fixed with pepe8

Conflicts:
	skxray/tests/test_speckle_visibility.py

API: changed the static_test_functions and tests for them
Doc: added more documentation

Conflicts:
	skxray/core/utils.py

…tion names and fix teh bugs

Conflicts:
	skxray/speckle_visibility/speckle_visibility.py
	skxray/tests/test_speckle_visibility.py

Conflicts:
	skxray/speckle_visibility/speckle_visibility.py

ENH: added threshold mask to the bin_ceners in circular_average function

API: moved the speckle_visibility file, del the speckle_visibility dir, and rename the module to speckle_analysis.py

BUG: removed the label_num = np.unique(labels)[1:]

API: changed the skxray/tests/test_speckle_visibility.py to skxray/tests/test_speckle_analysis.py

API: added new function for speckle count of pixels within required ROI labels

ENH: added

ENH

API: removed the xsvs1 functions

API:removed the circular_average function

DOC: fixed the documentation

DOC:fixed the documentation

… bin centers

…value and model value

…mize it

…ixed the documentation

fixed the problem with the std_dev

…n anotehr PR

…svs.py

fixed some bugs in the codes according to the comments

* upstream/master: (46 commits)
  DOC: more doc on optional param
  DOC: add doc about api change
  TST: add test for nnls
  DEV: better way to define weights for nnls
  BUG: new version of lmfit
  MNT: Resetting conda build string back to development
  Tagging v0.0.4
  Bumping version number in conda-recipe
  DOC: Added summary page for skxray.core
  MNT: Need two '=' in meta.yaml
  Helps to install packages to the right environment, eh?
  --add -> --set
  config -> conda, duh
  Make all conda operations default to yes
  MNT: Install deps from scikit-xray channel
  DOC: rename NSLS-II to scikit-xray and whitespace
  Update introduction
  Update docs to reflect skxray library inversion
  CLN: Remove unused skip_if import
  BLD/CLN: Isolate dependencies.
  ...

* upstream/master: (31 commits)
  DOC: added spaces and fixed the documentation
  BUG: changed the mean_intensity to an array instead of returning a list
  STY: fixed with pep8
  TST: fixed the bug in the tests
  ENH: changed the return of the mean_intensity function to an array(ealier it was returning a list)
  ENH: took out one [0] from the kymograph function and took out returning strings on the mean intensity function
  TST: took out the python 3 issue with dict_values()
  BLD: add updated .travis.yml file
  TST: took out pandas dependency in the test suite
  BLD: changed pip install to conda install pandas in .travis.yml
  APi: removed the mean_image_sets to combine mean_image_sets
  BLD: install pandas
  TST: fixed the issues with the mean intensity tests added new function to get combine mean intensities for image sets
  MNT: Remove pandas dep.
  ENH: Remove helper function
  TST: Rework and fix tests
  MNT: Mostly documentation
  DOC: Update the docstrings
  MNT: Remove lingering merge conflict
  TST: Remove test of private function
  ...