Tests failing locally: NotADirectoryError #1514
Answered
by
matthewfeickert
Saransh-cpp
asked this question in
Help things are broken
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|
I recently started exploring I am using I've also tried running the tests with Trace:└─$ python3 -m pytest
========================================================================================== test session starts ==========================================================================================platform linux -- Python 3.9.2, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
rootdir: /mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf, configfile: pyproject.toml, testpaths: src, tests
plugins: cov-2.12.1
collected 1387 items / 56 errors / 1331 selected
================================================================================================ ERRORS =================================================================================================_________________________________________________________________________________ ERROR collecting src/pyhf/_version.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/_version.py'
__________________________________________________________________________________ ERROR collecting src/pyhf/compat.py __________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/compat.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/constraints.py ________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/constraints.py'
__________________________________________________________________________________ ERROR collecting src/pyhf/events.py __________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/events.py'
__________________________________________________________________________________ ERROR collecting src/pyhf/mixins.py __________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/mixins.py'
_________________________________________________________________________________ ERROR collecting src/pyhf/patchset.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/patchset.py'
___________________________________________________________________________________ ERROR collecting src/pyhf/pdf.py ____________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/pdf.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/probability.py ________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/probability.py'
_________________________________________________________________________________ ERROR collecting src/pyhf/readxml.py __________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/readxml.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/simplemodels.py _______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/simplemodels.py'
__________________________________________________________________________________ ERROR collecting src/pyhf/utils.py ___________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/utils.py'
________________________________________________________________________________ ERROR collecting src/pyhf/workspace.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/workspace.py'
_________________________________________________________________________________ ERROR collecting src/pyhf/writexml.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/writexml.py'
_________________________________________________________________________________ ERROR collecting src/pyhf/cli/cli.py __________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/cli.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/cli/complete.py _______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/complete.py'
________________________________________________________________________________ ERROR collecting src/pyhf/cli/infer.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/infer.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/cli/patchset.py _______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/patchset.py'
________________________________________________________________________________ ERROR collecting src/pyhf/cli/rootio.py ________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/rootio.py'
_________________________________________________________________________________ ERROR collecting src/pyhf/cli/spec.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/spec.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/contrib/cli.py ________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/cli.py'
______________________________________________________________________________ ERROR collecting src/pyhf/contrib/utils.py _______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/utils.py'
____________________________________________________________________________ ERROR collecting src/pyhf/contrib/viz/brazil.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/viz/brazil.py'
____________________________________________________________________________ ERROR collecting src/pyhf/infer/calculators.py _____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/calculators.py'
_____________________________________________________________________________ ERROR collecting src/pyhf/infer/intervals.py ______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/intervals.py'
________________________________________________________________________________ ERROR collecting src/pyhf/infer/mle.py _________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/mle.py'
__________________________________________________________________________ ERROR collecting src/pyhf/infer/test_statistics.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/test_statistics.py'
__________________________________________________________________________ ERROR collecting src/pyhf/infer/test_statistics.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/test_statistics.py'
_______________________________________________________________________________ ERROR collecting src/pyhf/infer/utils.py ________________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/utils.py'
___________________________________________________________________________ ERROR collecting src/pyhf/interpolators/code0.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code0.py'
___________________________________________________________________________ ERROR collecting src/pyhf/interpolators/code1.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code1.py'
___________________________________________________________________________ ERROR collecting src/pyhf/interpolators/code2.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code2.py'
___________________________________________________________________________ ERROR collecting src/pyhf/interpolators/code4.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code4.py'
___________________________________________________________________________ ERROR collecting src/pyhf/interpolators/code4p.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code4p.py'
____________________________________________________________________________ ERROR collecting src/pyhf/modifiers/histosys.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/histosys.py'
______________________________________________________________________________ ERROR collecting src/pyhf/modifiers/lumi.py ______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/lumi.py'
___________________________________________________________________________ ERROR collecting src/pyhf/modifiers/normfactor.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/normfactor.py'
____________________________________________________________________________ ERROR collecting src/pyhf/modifiers/normsys.py _____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/normsys.py'
__________________________________________________________________________ ERROR collecting src/pyhf/modifiers/shapefactor.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/shapefactor.py'
____________________________________________________________________________ ERROR collecting src/pyhf/modifiers/shapesys.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/shapesys.py'
___________________________________________________________________________ ERROR collecting src/pyhf/modifiers/staterror.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/staterror.py'
_____________________________________________________________________________ ERROR collecting src/pyhf/optimize/common.py ______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/common.py'
_____________________________________________________________________________ ERROR collecting src/pyhf/optimize/mixins.py ______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/mixins.py'
_____________________________________________________________________________ ERROR collecting src/pyhf/optimize/opt_jax.py _____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_jax.py'
___________________________________________________________________________ ERROR collecting src/pyhf/optimize/opt_minuit.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_minuit.py'
____________________________________________________________________________ ERROR collecting src/pyhf/optimize/opt_numpy.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_numpy.py'
___________________________________________________________________________ ERROR collecting src/pyhf/optimize/opt_pytorch.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_pytorch.py'
____________________________________________________________________________ ERROR collecting src/pyhf/optimize/opt_scipy.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_scipy.py'
____________________________________________________________________________ ERROR collecting src/pyhf/optimize/opt_tflow.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_tflow.py'
___________________________________________________________________________ ERROR collecting src/pyhf/parameters/paramsets.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/paramsets.py'
___________________________________________________________________________ ERROR collecting src/pyhf/parameters/paramview.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/paramview.py'
_____________________________________________________________________________ ERROR collecting src/pyhf/parameters/utils.py _____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/utils.py'
______________________________________________________________________________ ERROR collecting src/pyhf/tensor/common.py _______________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/common.py'
____________________________________________________________________________ ERROR collecting src/pyhf/tensor/jax_backend.py ____________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/jax_backend.py'
___________________________________________________________________________ ERROR collecting src/pyhf/tensor/numpy_backend.py ___________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/numpy_backend.py'
__________________________________________________________________________ ERROR collecting src/pyhf/tensor/pytorch_backend.py __________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/pytorch_backend.py'
________________________________________________________________________ ERROR collecting src/pyhf/tensor/tensorflow_backend.py _________________________________________________________________________/usr/lib/python3.9/genericpath.py:101: in samefile
s2 = os.stat(f2)
E NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/tensorflow_backend.py'
=========================================================================================== warnings summary ============================================================================================../../../../../../../../home/saransh/.local/lib/python3.9/site-packages/tensorflow/python/autograph/impl/api.py:22
/home/saransh/.local/lib/python3.9/site-packages/tensorflow/python/autograph/impl/api.py:22: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
../../../../../../../../home/saransh/.local/lib/python3.9/site-packages/papermill/iorw.py:50
/home/saransh/.local/lib/python3.9/site-packages/papermill/iorw.py:50: FutureWarning: pyarrow.HadoopFileSystem is deprecated as of 2.0.0, please use pyarrow.fs.HadoopFileSystem instead.
from pyarrow import HadoopFileSystem
tests/contrib/test_viz.py:53
/mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf/tests/contrib/test_viz.py:53: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? You can register custom
marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.mpl_image_compare
tests/contrib/test_viz.py:67
/mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf/tests/contrib/test_viz.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? You can register custom
marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.mpl_image_compare
tests/contrib/test_viz.py:79
/mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf/tests/contrib/test_viz.py:79: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? You can register custom
marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.mpl_image_compare
tests/contrib/test_viz.py:91
/mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf/tests/contrib/test_viz.py:91: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? You can register custom
marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.mpl_image_compare
tests/contrib/test_viz.py:111
/mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf/tests/contrib/test_viz.py:111: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.mpl_image_compare
tests/contrib/test_viz.py:131
/mnt/c/Users/Saransh/Saransh_softwares/OpenSource/Python/pyhf/tests/contrib/test_viz.py:131: PytestUnknownMarkWarning: Unknown pytest.mark.mpl_image_compare - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
@pytest.mark.mpl_image_compare
-- Docs: https://docs.pytest.org/en/stable/warnings.html
----------- coverage: platform linux, python 3.9.2-final-0 -----------
Name Stmts Miss Branch BrPart Cover Missing
-------------------------------------------------------------------------------------------------------------------------------------------
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/__init__.py 74 51 36 0 21% 71-151, 187
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/_version.py 2 0 0 0 100%
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/__init__.py 9 1 0 0 89% 13
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/cli.py 30 4 2 0 81% 16-19
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/complete.py 13 6 0 0 54% 7-17, 26
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/infer.py 84 51 34 0 28% 83-127, 190-241
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/patchset.py 68 40 8 0 37% 42-59, 82-98, 114-125, 137-144
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/rootio.py 51 28 4 0 42% 34-52, 64-87
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/spec.py 145 98 36 0 26% 62-159, 188-205, 252-268, 297-314, 346-362, 392-403
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/compat.py 34 29 20 0 9% 11, 47-53, 90-120
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/constraints.py 134 116 42 0 10% 10, 15-80, 83-88, 95, 105-122, 133-142, 147-211, 214-219, 226, 236-254, 265-274
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/__init__.py 0 0 0 0 100%
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/cli.py 26 10 4 0 53% 13, 29, 64-73
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/utils.py 25 14 8 0 33% 15, 47-68
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/viz/__init__.py 0 0 0 0 100%
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/viz/brazil.py 65 56 34 0 9% 16, 117-157, 209-238, 314-372
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/events.py 40 18 2 0 52% 20, 24, 29, 34-36, 39, 56-60, 92-95, 107-108, 116, 124
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/exceptions/__init__.py 42 16 4 0 57% 28, 53-66, 163-167
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/__init__.py 37 29 18 0 15% 9-15, 143-192, 201
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/calculators.py 138 108 18 0 19% 29, 64-67, 95-96, 117-118, 153-158, 183-184, 246-253, 284-297, 324-375, 413-418, 458-459, 497-498, 546-547, 608-613, 659-666, 699-751, 791-796, 836-856, 887-896
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/intervals.py 20 13 10 0 23% 10, 14-15, 57-73
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/mle.py 27 19 8 0 23% 9, 53, 57-59, 117-131, 191-202
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/test_statistics.py 56 42 22 0 18% 13, 24-31, 43-56, 111-120, 180-189, 238-247, 301-310, 358-376
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/utils.py 19 9 0 0 53% 15, 32-33, 69, 105-113
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/__init__.py 30 20 8 0 26% 5-18, 31-42, 49
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code0.py 50 36 6 0 25% 29-40, 43-48, 51-56, 60-84, 89-95, 98, 101-102
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code1.py 56 41 6 0 24% 30-46, 49-60, 63-75, 79-100, 105-111, 114, 117-118
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code2.py 60 46 8 0 21% 33-47, 50-58, 61-66, 70-117, 122-130, 133, 136-137
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code4.py 84 69 12 0 16% 37-128, 131-145, 150-165, 169-234, 279-353, 356-357, 360-361
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code4p.py 65 51 8 0 19% 22-33, 36-45, 48-53, 57-109, 118-130, 133, 136-137
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/mixins.py 29 25 8 0 11% 17-51
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/__init__.py 61 13 22 7 71% 19, 37, 45, 53, 141, 144, 149-161, 214
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/histosys.py 44 30 20 0 25% 15, 32-69, 72-78, 87-101
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/lumi.py 36 23 14 0 30% 14, 31-47, 50-57, 64-74
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/normfactor.py 38 25 14 0 29% 14, 28-46, 49-58, 65-82
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/normsys.py 44 30 20 0 25% 15, 32-67, 70-79, 88-102
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/shapefactor.py 46 33 22 0 22% 14, 66-116, 119-131, 138-153
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/shapesys.py 73 58 32 0 16% 17-22, 40-82, 85-106, 111-120, 124-154, 161-177
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/staterror.py 60 46 26 0 19% 14, 29-74, 77-86, 89-117, 120-133
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/__init__.py 22 2 6 1 89% 29-30, 34->exit
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/common.py 44 39 22 0 8% 21-28, 38-58, 109-157
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/mixins.py 54 41 18 1 19% 27, 35-53, 62-99, 146-172
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_jax.py 24 15 4 0 32% 14-24, 48-80
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_minuit.py 59 44 20 0 19% 46-69, 99-135
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_numpy.py 11 8 2 0 23% 22-32
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_pytorch.py 18 15 2 0 15% 22-42
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_scipy.py 29 17 12 0 29% 36, 66-87
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_tflow.py 18 15 2 0 15% 20-43
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/__init__.py 6 1 0 0 83% 21
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/paramsets.py 48 33 6 0 28% 13, 18-25, 32-33, 38-39, 44-49, 52-55, 60-65, 68-73
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/paramview.py 38 28 8 0 22% 11, 15-23, 27-43, 53-73, 76-79, 88-92
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/utils.py 31 27 16 0 9% 7, 11-70
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/patchset.py 94 54 16 0 36% 16, 42-43, 48, 53, 58, 62-64, 68-70, 162-200, 205, 210, 215, 220, 225, 230, 235, 239-241, 254-259, 270, 279, 294-297, 316-317
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/pdf.py 309 256 113 0 13% 23, 28-67, 71-94, 98-210, 230-262, 279-282, 299-302, 320, 338, 368-372, 387-394, 397-409, 416-441, 451, 466-478, 492-493, 500-529, 532-533, 543, 546-547, 561, 564-577, 606-629, 648-687, 702-704, 707, 712, 725-727, 740-744, 758, 772, 785-796, 810-838, 852-853
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/probability.py 62 37 10 0 35% 8, 25, 35, 48, 68-70, 87, 109-112, 130, 155-156, 185-188, 224-226, 236, 250, 260-261, 274, 287-289, 293-299
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/readxml.py 161 140 79 0 9% 30, 48-49, 54-75, 81-197, 206-213, 217-243, 258-313, 317-331, 335-363, 368
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/simplemodels.py 16 8 0 0 50% 9, 51-78, 114-141, 148, 164-170
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/__init__.py 34 6 8 0 86% 21-22, 34-35, 47-48
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/common.py 50 41 20 0 13% 17-26, 29-35, 38-48, 51-60, 67-73, 87-94
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/jax_backend.py 137 74 2 0 45% 18, 22, 28-29, 34-35, 39, 47-48, 91, 112, 132, 154, 178, 181-186, 189, 192, 195, 198, 222-230, 233, 236, 239, 242-251, 254-263, 266, 269, 272, 275, 278, 281, 284, 298, 320, 323, 326, 346, 366, 369-371, 399-401, 407-411, 442, 466, 487, 511, 538
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/numpy_backend.py 131 72 2 0 44% 14, 17, 20-21, 26-27, 30, 33-34, 77, 97, 117, 139, 163, 166-171, 174, 177, 180, 183, 206-214, 217, 220, 223, 226-235, 238-247, 250, 253, 256, 259, 262, 265, 268, 282, 304, 307, 310, 330, 349, 352, 380-382, 388-392, 423, 447, 468, 492, 520
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/pytorch_backend.py 126 75 8 0 38% 30, 52, 72, 92, 116, 119-124, 146, 170, 193-201, 204, 207, 210, 213,
233, 236, 243, 246, 249-258, 261-270, 273, 276, 279, 282, 285, 288, 291, 305, 308, 331-344, 358, 362, 391, 396-401, 429-434, 464-465, 488, 512, 539
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/tensorflow_backend.py 144 95 14 0 31% 50-54, 75, 96, 120-127, 152, 155-160, 163-170, 173, 176, 179, 204-221, 224, 231, 238, 241-250, 253-262, 265, 268, 271, 274, 295, 298, 301, 304, 307, 334, 348, 374-382, 399, 428-430, 459-461, 490-493, 522-525, 550-553, 576-578, 603-606, 634
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/utils.py 62 29 6 1 50% 26, 31->33, 52-64, 68-71, 78-81, 112-124, 143-154
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/workspace.py 218 183 138 0 10% 23, 42-73, 92-96, 117-140, 159-182, 203-214, 233-279, 291-306, 310-312, 316, 320, 347-382, 399-418, 437-449, 499-602, 632-638, 667-672, 712-744, 758-772, 788-811
/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/writexml.py 147 125 62 0 11% 30, 46-47, 51-55, 60-72, 88-134, 138-231, 235-253, 257-262, 266-274,
280-315
-------------------------------------------------------------------------------------------------------------------------------------------
TOTAL 4008 2784 1132 10 25%
Coverage XML written to file coverage.xml
======================================================================================== short test summary info ========================================================================================ERROR src/pyhf/_version.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/_version.py'
ERROR src/pyhf/compat.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/compat.py'
ERROR src/pyhf/constraints.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/constraints.py'
ERROR src/pyhf/events.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/events.py'
ERROR src/pyhf/mixins.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/mixins.py'
ERROR src/pyhf/patchset.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/patchset.py'
ERROR src/pyhf/pdf.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/pdf.py'
ERROR src/pyhf/probability.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/probability.py'
ERROR src/pyhf/readxml.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/readxml.py'
ERROR src/pyhf/simplemodels.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/simplemodels.py'
ERROR src/pyhf/utils.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/utils.py'
ERROR src/pyhf/workspace.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/workspace.py'
ERROR src/pyhf/writexml.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/writexml.py'
ERROR src/pyhf/cli/cli.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/cli.py'
ERROR src/pyhf/cli/complete.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/complete.py'
ERROR src/pyhf/cli/infer.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/infer.py'
ERROR src/pyhf/cli/patchset.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/patchset.py'
ERROR src/pyhf/cli/rootio.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/rootio.py'
ERROR src/pyhf/cli/spec.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/cli/spec.py'
ERROR src/pyhf/contrib/cli.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/cli.py'
ERROR src/pyhf/contrib/utils.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/utils.py'
ERROR src/pyhf/contrib/viz/brazil.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/contrib/viz/brazil.py'
ERROR src/pyhf/infer/calculators.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/calculators.py'
ERROR src/pyhf/infer/intervals.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/intervals.py'
ERROR src/pyhf/infer/mle.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/mle.py'
ERROR src/pyhf/infer/test_statistics.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/test_statistics.py'
ERROR src/pyhf/infer/test_statistics.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/test_statistics.py'
ERROR src/pyhf/infer/utils.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/infer/utils.py'
ERROR src/pyhf/interpolators/code0.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code0.py'
ERROR src/pyhf/interpolators/code1.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code1.py'
ERROR src/pyhf/interpolators/code2.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code2.py'
ERROR src/pyhf/interpolators/code4.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code4.py'
ERROR src/pyhf/interpolators/code4p.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/interpolators/code4p.py'
ERROR src/pyhf/modifiers/histosys.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/histosys.py'
ERROR src/pyhf/modifiers/lumi.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/lumi.py'
ERROR src/pyhf/modifiers/normfactor.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/normfactor.py'
ERROR src/pyhf/modifiers/normsys.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/normsys.py'
ERROR src/pyhf/modifiers/shapefactor.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/shapefactor.py'
ERROR src/pyhf/modifiers/shapesys.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/shapesys.py'
ERROR src/pyhf/modifiers/staterror.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/modifiers/staterror.py'
ERROR src/pyhf/optimize/common.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/common.py'
ERROR src/pyhf/optimize/mixins.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/mixins.py'
ERROR src/pyhf/optimize/opt_jax.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_jax.py'
ERROR src/pyhf/optimize/opt_minuit.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_minuit.py'
ERROR src/pyhf/optimize/opt_numpy.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_numpy.py'
ERROR src/pyhf/optimize/opt_pytorch.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_pytorch.py'
ERROR src/pyhf/optimize/opt_scipy.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_scipy.py'
ERROR src/pyhf/optimize/opt_tflow.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/optimize/opt_tflow.py'
ERROR src/pyhf/parameters/paramsets.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/paramsets.py'
ERROR src/pyhf/parameters/paramview.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/paramview.py'
ERROR src/pyhf/parameters/utils.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/parameters/utils.py'
ERROR src/pyhf/tensor/common.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/common.py'
ERROR src/pyhf/tensor/jax_backend.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/jax_backend.py'
ERROR src/pyhf/tensor/numpy_backend.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/numpy_backend.py'
ERROR src/pyhf/tensor/pytorch_backend.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/pytorch_backend.py'
ERROR src/pyhf/tensor/tensorflow_backend.py - NotADirectoryError: [Errno 20] Not a directory: '/usr/local/lib/python3.9/dist-packages/pyhf-0.0.0-py3.9.egg/pyhf/tensor/tensorflow_backend.py'
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 56 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!==================================================================================== 8 warnings, 56 errors in 35.92s ==================================================================================== |
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Answered by
matthewfeickert
Jul 2, 2021
Replies: 1 comment 7 replies
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@Saransh-cpp Can you tell us how you installed things? What's your in the trace that things aren't getting installed properly. |
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7 replies
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Apologies for the late reply, weirdly in Python 3.8, I have the python3.8 -m pip listPackage Version
----------------------------- ---------
absl-py 0.13.0
alabaster 0.7.12
ansiwrap 0.8.4
anyio 3.2.1
appdirs 1.4.4
argon2-cffi 20.1.0
astunparse 1.6.3
async-generator 1.10
attrs 21.2.0
awkward0 0.15.5
Babel 2.9.1
backcall 0.2.0
black 21.6b0
bleach 3.3.0
build 0.5.1
bump2version 1.0.1
cachetools 4.2.2
certifi 2021.5.30
cffi 1.14.5
cfgv 3.3.0
chardet 4.0.0
check-manifest 0.46
click 8.0.1
click-completion 0.5.2
cloudpickle 1.3.0
CodeMetaPy 0.3.5
colorama 0.4.4
coverage 5.5
cryptography 3.4.7
cycler 0.10.0
debugpy 1.3.0
decorator 5.0.9
defusedxml 0.7.1
distlib 0.3.2
docutils 0.17.1
entrypoints 0.3
filelock 3.0.12
flake8 3.9.2
flatbuffers 2.0
gast 0.5.0
gitdb 4.0.7
GitPython 3.1.18
google-auth 1.32.1
google-auth-oauthlib 0.4.4
google-pasta 0.2.0
graphviz 0.16
grpcio 1.38.1
h5py 2.10.0
identify 2.2.10
idna 2.10
imagesize 1.2.0
iminuit 2.6.1
importlib-metadata 4.6.0
iniconfig 1.1.1
ipykernel 6.0.0
ipython 7.25.0
ipython-genutils 0.2.0
ipywidgets 7.6.3
jax 0.2.16
jaxlib 0.1.67
jedi 0.18.0
jeepney 0.6.0
Jinja2 3.0.1
jsonpatch 1.32
jsonpointer 2.1
jsonschema 4.0.0a1
jupyter 1.0.0
jupyter-client 6.1.12
jupyter-console 6.4.0
jupyter-core 4.7.1
jupyter-server 1.9.0
jupyter-server-mathjax 0.2.3
jupyterlab-pygments 0.1.2
jupyterlab-widgets 1.0.0
Keras-Preprocessing 1.1.2
keyring 23.0.1
kiwisolver 1.3.1
latexcodec 2.0.1
Markdown 3.3.4
MarkupSafe 2.0.1
matplotlib 3.4.2
matplotlib-inline 0.1.2
mccabe 0.6.1
mistune 0.8.4
mock 4.0.3
mypy-extensions 0.4.3
nameparser 1.0.6
nbclient 0.5.3
nbconvert 6.1.0
nbdime 3.1.0
nbformat 5.1.3
nbsphinx 0.8.6
nest-asyncio 1.5.1
nodeenv 1.6.0
notebook 6.4.0
nteract-scrapbook 0.4.2
numpy 1.21.0
oauthlib 3.1.1
opt-einsum 3.3.0
packaging 20.9
pandas 1.2.5
pandocfilters 1.4.3
papermill 2.3.3
parso 0.8.2
pathspec 0.8.1
pep517 0.10.0
pexpect 4.8.0
pickleshare 0.7.5
Pillow 8.3.0
pip 20.2.1
pkginfo 1.7.0
pluggy 0.13.1
pre-commit 2.13.0
prometheus-client 0.11.0
prompt-toolkit 3.0.19
protobuf 3.17.3
ptyprocess 0.7.0
py 1.10.0
py-cpuinfo 8.0.0
pyarrow 4.0.1
pyasn1 0.4.8
pyasn1-modules 0.2.8
pybtex 0.24.0
pybtex-docutils 1.0.0
pycodestyle 2.7.0
pycparser 2.20
pydocstyle 6.1.1
pyflakes 2.3.1
pygal 2.4.0
pygaljs 1.0.2
Pygments 2.9.0
pyhf 0.0.0
pyparsing 2.4.7
pyrsistent 0.18.0
pytest 6.2.4
pytest-benchmark 3.4.1
pytest-console-scripts 1.2.0
pytest-cov 2.12.1
pytest-mock 3.6.1
pytest-mpl 0.12
python-dateutil 2.8.1
pytz 2021.1
PyYAML 5.4.1
pyzmq 22.1.0
qtconsole 5.1.1
QtPy 1.9.0
readme-renderer 29.0
regex 2021.7.1
requests 2.25.1
requests-oauthlib 1.3.0
requests-toolbelt 0.9.1
requests-unixsocket 0.2.0
rfc3986 1.5.0
rsa 4.7.2
scipy 1.7.0
SecretStorage 3.3.1
Send2Trash 1.7.1
setuptools 49.2.1
shellingham 1.4.0
six 1.16.0
smmap 4.0.0
sniffio 1.2.0
snowballstemmer 2.1.0
Sphinx 4.0.2
sphinx-click 3.0.1
sphinx-copybutton 0.3.3
sphinx-issues 1.2.0
sphinx-rtd-theme 0.5.2
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-bibtex 2.3.0
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 2.0.0
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.5
tenacity 7.0.0
tensorboard 2.2.2
tensorboard-plugin-wit 1.8.0
tensorflow 2.2.3
tensorflow-estimator 2.2.0
tensorflow-probability 0.10.1
termcolor 1.1.0
terminado 0.10.1
testpath 0.5.0
textwrap3 0.9.2
toml 0.10.2
torch 1.9.0
tornado 6.1
tqdm 4.61.1
traitlets 5.0.5
twine 3.4.1
typing-extensions 3.10.0.0
uproot 4.0.11
uproot3 3.14.4
uproot3-methods 0.10.1
urllib3 1.26.6
virtualenv 20.4.7
wcwidth 0.2.5
webencodings 0.5.1
websocket-client 1.1.0
Werkzeug 2.0.1
wheel 0.36.2
widgetsnbextension 3.5.1
wrapt 1.12.1
zipp 3.4.1Should I try installing pyhf using |
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This makes it seem like you don't have the full Git history available to you — we use the Git version history to get the tags to determine the version numbers at build time. How are you getting the repository? You should be doing basically the following (but in your system not Docker) $ docker run --rm -ti python:3.8 /bin/bash
root@87b4cd52688c:/# python -m venv pyhf-dev
root@87b4cd52688c:/# . pyhf-dev/bin/activate
(pyhf-dev) root@87b4cd52688c:/# git clone https://github.com/scikit-hep/pyhf.git
(pyhf-dev) root@87b4cd52688c:/# cd pyhf
(pyhf-dev) root@87b4cd52688c:/pyhf# python -m pip --quiet install --upgrade pip setuptools wheel
(pyhf-dev) root@87b4cd52688c:/pyhf# python -m pip --quiet install --upgrade --editable .[complete]
(pyhf-dev) root@87b4cd52688c:/pyhf# python -m pip --quiet install --upgrade "click<8.0.0" # Needed at the moment given Issue #1506
(pyhf-dev) root@87b4cd52688c:/pyhf# python -m pip list | grep pyhf
pyhf 0.6.3.dev3 /pyhf/src
(pyhf-dev) root@87b4cd52688c:/pyhf# git checkout origin/master -b whatever-you-are-going-to-call-your-feature-branchIf this is what you're doing already then it sounds like there's some problem with your Python WSL setup. I'm not really sure how to help there as I don't use WSL, so you might need to debug that with Stack Overflow or something first — sorry. :/
No. In modern Python packages you should avoid directly calling |
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The python version installed on my wsl was missing some modules, after downloading them and reconfiguring everything this worked like a charm, thank you so much! I did go through the documentation but I think I missed some stuff. I am still getting some errors while running the tests but I don't think they are related to the installation anymore. Running tests:└─$ python3.8 -m pytest
================================================= test session starts ==================================================platform linux -- Python 3.8.6, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
benchmark: 3.4.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
Matplotlib: 3.4.2
Freetype: 2.6.1
rootdir: /mnt/d/OpenSource/python/pyhf/pyhf, configfile: pyproject.toml, testpaths: src, tests
plugins: anyio-3.2.1, benchmark-3.4.1, console-scripts-1.2.0, cov-2.12.1, mock-3.6.1, mpl-0.13
collected 1496 items
src/pyhf/__init__.py .. [ 0%]
src/pyhf/compat.py .. [ 0%]
src/pyhf/patchset.py . [ 0%]
src/pyhf/pdf.py ...... [ 0%]
src/pyhf/probability.py ....... [ 1%]
src/pyhf/simplemodels.py .. [ 1%]
src/pyhf/utils.py .. [ 1%]
src/pyhf/contrib/utils.py . [ 1%]
src/pyhf/contrib/viz/brazil.py ... [ 1%]
src/pyhf/infer/__init__.py . [ 1%]
src/pyhf/infer/calculators.py .............. [ 2%]
src/pyhf/infer/intervals.py . [ 2%]
src/pyhf/infer/mle.py ... [ 3%]
src/pyhf/infer/test_statistics.py ..... [ 3%]
src/pyhf/infer/utils.py .. [ 3%]
src/pyhf/tensor/jax_backend.py .............. [ 4%]
src/pyhf/tensor/numpy_backend.py .............. [ 5%]
src/pyhf/tensor/pytorch_backend.py ............... [ 6%]
src/pyhf/tensor/tensorflow_backend.py ................. [ 7%]
tests/test_backend_consistency.py .... [ 7%]
tests/test_calculator.py . [ 7%]
tests/test_cli.py .. [ 7%]
tests/test_combined_modifiers.py ................................................ [ 11%]
tests/test_compat.py ... [ 11%]
tests/test_constraints.py ............ [ 12%]
tests/test_events.py ..... [ 12%]
tests/test_examples.py . [ 12%]
tests/test_export.py ........................ [ 14%]
tests/test_import.py ................ [ 15%]
tests/test_infer.py ..................................................................... [ 19%]
tests/test_init.py ...... [ 20%]
tests/test_interpolate.py ...................................................................................... [ 26%]
................... [ 27%]
tests/test_jit.py ................................ [ 29%]
tests/test_mixins.py .. [ 29%]
tests/test_modifiers.py ............ [ 30%]
tests/test_notebooks.py .......F.... [ 31%]
tests/test_optim.py .sss.s...................................................................................... [ 37%]
.......sssss.sssss................... [ 39%]
tests/test_paramsets.py ...... [ 40%]
tests/test_paramviewer.py ............. [ 41%]
tests/test_patchset.py ........................... [ 42%]
tests/test_pdf.py ............................sssss...................sssss.......sssss.......... [ 48%]
tests/test_probability.py ......................... [ 49%]
tests/test_public_api.py ................................................................. [ 54%]
tests/test_public_api_repr.py ............................. [ 56%]
tests/test_regression.py ..... [ 56%]
tests/test_schema.py .................................................. [ 59%]
tests/test_scripts.py ............................................................ [ 63%]
tests/test_simplemodels.py ... [ 63%]
tests/test_tensor.py ........................................................................................... [ 70%]
......ss...s..sss...................x............................sss.ss.................................... [ 77%]
tests/test_tensorviewer.py ...... [ 77%]
tests/test_teststats.py ......... [ 78%]
tests/test_toys.py ...... [ 78%]
tests/test_utils.py ....................... [ 80%]
tests/test_validation.py ............................ [ 82%]
tests/test_workspace.py ........................................................................................ [ 87%]
................................................................................................................ [ 95%]
............................... [ 97%]
tests/benchmarks/test_benchmark.py .............................. [ 99%]
tests/contrib/test_viz.py ........ [100%]
======================================================= FAILURES =======================================================___________________________________________________ test_impactplot ____________________________________________________
common_kwargs = {'kernel_name': 'python3', 'output_path': '/tmp/pytest-of-saransh/pytest-0/test_impactplot0/output.ipynb'}
def test_impactplot(common_kwargs):
> pm.execute_notebook('docs/examples/notebooks/ImpactPlot.ipynb', **common_kwargs)
tests/test_notebooks.py:62:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../pyhf-dev/lib/python3.8/site-packages/papermill/execute.py:122: in execute_notebook
raise_for_execution_errors(nb, output_path)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
nb = {'cells': [{'id': 'cf2e2a2c', 'cell_type': 'markdown', 'source': '<span style="color:red; font-family:Helvetica Neue, ...nd_time': '2021-07-03T19:33:55.134296', 'duration': 43.156918, 'exception': True}}, 'nbformat': 4, 'nbformat_minor': 5}
output_path = '/tmp/pytest-of-saransh/pytest-0/test_impactplot0/output.ipynb'
def raise_for_execution_errors(nb, output_path):
"""Assigned parameters into the appropriate place in the input notebook
Parameters
----------
nb : NotebookNode
Executable notebook object
output_path : str
Path to write executed notebook
"""
error = None
for index, cell in enumerate(nb.cells):
if cell.get("outputs") is None:
continue
for output in cell.outputs:
if output.output_type == "error":
if output.ename == "SystemExit" and (output.evalue == "" or output.evalue == "0"):
continue
error = PapermillExecutionError(
cell_index=index,
exec_count=cell.execution_count,
source=cell.source,
ename=output.ename,
evalue=output.evalue,
traceback=output.traceback,
)
break
if error:
# Write notebook back out with the Error Message at the top of the Notebook, and a link to
# the relevant cell (by adding a note just before the failure with an HTML anchor)
error_msg = ERROR_MESSAGE_TEMPLATE % str(error.exec_count)
error_msg_cell = nbformat.v4.new_markdown_cell(error_msg)
error_msg_cell.metadata['tags'] = [ERROR_MARKER_TAG]
error_anchor_cell = nbformat.v4.new_markdown_cell(ERROR_ANCHOR_MSG)
error_anchor_cell.metadata['tags'] = [ERROR_MARKER_TAG]
# put the anchor before the cell with the error, before all the indices change due to the
# heading-prepending
nb.cells.insert(error.cell_index, error_anchor_cell)
nb.cells.insert(0, error_msg_cell)
write_ipynb(nb, output_path)
> raise error
E papermill.exceptions.PapermillExecutionError:
E ---------------------------------------------------------------------------
E Exception encountered at "In [7]":
E ---------------------------------------------------------------------------
E ValueError Traceback (most recent call last)
E /tmp/ipykernel_12093/1214801126.py in <module>
E ----> 1 impacts, labels = get_impact_data()
E
E /tmp/ipykernel_12093/1774488122.py in get_impact_data()
E 31 if i % 5 == 0:
E 32 print(i)
E ---> 33 impct = calc_impact(i, b[i], e[i], width, initv[i], model.config.poi_index)
E 34 impacts.append(impct - poi_free)
E 35 return np.asarray(impacts), labels
E
E /tmp/ipykernel_12093/3799593230.py in calc_impact(idx, b, e, i, width, poi_index)
E 6 poi_dn_post = bb[poi_index]
E 7
E ----> 8 _, _, bb, ee = fitresults([(idx, b + width)])
E 9 poi_up_pre = bb[poi_index]
E 10
E
E /tmp/ipykernel_12093/3576754807.py in fitresults(constraints)
E 12 fixed_params[idx] = True
E 13
E ---> 14 result = pyhf.infer.mle.fit(
E 15 data,
E 16 model,
E
E /mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/infer/mle.py in fit(data, pdf, init_pars, par_bounds, fixed_params, **kwargs)
E 120 fixed_params = fixed_params or pdf.config.suggested_fixed()
E 121
E --> 122 _validate_fit_inputs(init_pars, par_bounds, fixed_params)
E 123
E 124 # get fixed vals from the model
E
E /mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/infer/mle.py in _validate_fit_inputs(init_pars, par_bounds, fixed_params)
E 57 for par_idx, (value, bound) in enumerate(zip(init_pars, par_bounds)):
E 58 if not (bound[0] <= value <= bound[1]):
E ---> 59 raise ValueError(
E 60 f"fit initialization parameter (index: {par_idx}, value: {value}) lies outside of its bounds: {bound}"
E 61 + "\nTo correct this adjust the initialization parameter values in the model spec or those given"
E
E ValueError: fit initialization parameter (index: 0, value: 1.9999586270208174) lies outside of its bounds: [0.915, 1.085]
E To correct this adjust the initialization parameter values in the model spec or those given
E as arguments to pyhf.infer.fit. If this value is intended, adjust the range of the parameter
E bounds.
../pyhf-dev/lib/python3.8/site-packages/papermill/execute.py:234: PapermillExecutionError
------------------------------------------------- Captured stderr call -------------------------------------------------Executing: 77%|███████▋ | 10/13 [00:43<00:12, 4.32s/cell]
=================================================== warnings summary ===================================================../pyhf-dev/lib/python3.8/site-packages/tensorflow/python/pywrap_tensorflow_internal.py:15
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/tensorflow/python/pywrap_tensorflow_internal.py:15: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
../pyhf-dev/lib/python3.8/site-packages/pandas/compat/__init__.py:109
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/pandas/compat/__init__.py:109: UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError.
warnings.warn(msg)
../pyhf-dev/lib/python3.8/site-packages/papermill/iorw.py:50
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/papermill/iorw.py:50: FutureWarning: pyarrow.HadoopFileSystem is deprecated as of 2.0.0, please use pyarrow.fs.HadoopFileSystem instead.
from pyarrow import HadoopFileSystem
../pyhf-dev/lib/python3.8/site-packages/scrapbook/__init__.py:8
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/scrapbook/__init__.py:8: FutureWarning: 'nteract-scrapbook' package has been renamed to `scrapbook`. No new releases are going out for this old package name.
warnings.warn("'nteract-scrapbook' package has been renamed to `scrapbook`. No new releases are going out for this old package name.", FutureWarning)
src/pyhf/infer/test_statistics.py: 2 warnings
tests/test_optim.py: 6 warnings
tests/test_regression.py: 4 warnings
tests/test_teststats.py: 2 warnings
tests/test_validation.py: 3 warnings
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:352: RuntimeWarning: invalid value encountered in log
return n * np.log(lam) - lam - gammaln(n + 1.0)
tests/test_backend_consistency.py::test_hypotest_qmu_tilde[normal-50_bins]
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/tensorflow/python/framework/indexed_slices.py:349: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.9 it will stop working
if not isinstance(values, collections.Sequence):
tests/test_notebooks.py::test_hello_world
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/hello-world.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_xml_importexport
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/XML_ImportExport.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_statisticalanalysis
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='StatisticalAnalysis.ipynb'). object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_shapefactor
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/ShapeFactor.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_multichannel_coupled_histos
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/multichannel-coupled-histo.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_multibinpois
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/multiBinPois.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_pullplot
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/pullplot.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_impactplot
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/ImpactPlot.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_toys
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/toys.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_learn_interpolationcodes
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/learn/InterpolationCodes.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_learn_tensorizinginterpolations
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/learn/TensorizingInterpolations.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_notebooks.py::test_learn_using_calculators
/mnt/d/OpenSource/python/pyhf/pyhf-dev/lib/python3.8/site-packages/traitlets/config/configurable.py:82: DeprecationWarning: Passing unrecognized arguments to super(PapermillNotebookClient).__init__(input_path='docs/examples/notebooks/learn/UsingCalculators.ipynb').
object.__init__() takes exactly one argument (the instance to initialize)
This is deprecated in traitlets 4.2.This error will be raised in a future release of traitlets.
super(Configurable, self).__init__(**kwargs)
tests/test_optim.py::test_bad_solver_options_scipy
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/optimize/opt_scipy.py:87: OptimizeWarning: Unknown solver options: arbitrary_option
return minimizer(
tests/test_pdf.py::test_pdf_integration_shapesys_zeros[numpy]
tests/test_pdf.py::test_pdf_integration_shapesys_zeros[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:256: RuntimeWarning: divide by zero encountered in true_divide
return np.divide(tensor_in_1, tensor_in_2)
tests/test_public_api.py::test_pdf_batched_deprecated_api[numpy]
tests/test_public_api.py::test_pdf_batched_deprecated_api[pytorch]
tests/test_public_api.py::test_pdf_batched_deprecated_api[pytorch64]
tests/test_public_api.py::test_pdf_batched_deprecated_api[tensorflow]
tests/test_public_api.py::test_pdf_batched_deprecated_api[jax]
tests/test_public_api.py::test_pdf_batched_deprecated_api[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/tests/test_public_api.py:198: DeprecationWarning: pyhf.simplemodels.hepdata_like is deprecated in favor of pyhf.simplemodels.uncorrelated_background as of pyhf v0.6.2 and will be removed in release 0.7.0. Please use pyhf.simplemodels.uncorrelated_background.
model = pyhf.simplemodels.hepdata_like(
tests/test_scripts.py::test_testpoi[inprocess]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/infer/calculators.py:369: RuntimeWarning: invalid value encountered in double_scalars
teststat = (qmu - qmu_A) / (2 * self.sqrtqmuA_v)
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:390: RuntimeWarning: divide by zero encountered in log
prefactor = -np.log(sigma * root2pi)
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:391: RuntimeWarning: divide by zero encountered in true_divide
summand = -np.square(np.divide((x - mu), (root2 * sigma)))
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:391: RuntimeWarning: invalid value encountered in true_divide
summand = -np.square(np.divide((x - mu), (root2 * sigma)))
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:392: RuntimeWarning: invalid value encountered in add
return prefactor + summand
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:382: RuntimeWarning: divide by zero encountered in log
return np.exp(n * np.log(lam) - lam - gammaln(n + 1.0))
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:382: RuntimeWarning: invalid value encountered in multiply
return np.exp(n * np.log(lam) - lam - gammaln(n + 1.0))
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
tests/test_validation.py::test_validation[1bin_lumi_mu1]
tests/test_validation.py::test_validation[2bin_2channel_coupledshapefactor_mu1]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:352: RuntimeWarning: divide by zero encountered in log
return n * np.log(lam) - lam - gammaln(n + 1.0)
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/src/pyhf/tensor/numpy_backend.py:352: RuntimeWarning: invalid value encountered in multiply
return n * np.log(lam) - lam - gammaln(n + 1.0)
tests/test_tensor.py::test_pdf_calculations[numpy]
tests/test_tensor.py::test_pdf_calculations[tensorflow]
tests/test_tensor.py::test_pdf_calculations[jax]
tests/test_tensor.py::test_pdf_calculations[numpy_minuit]
/mnt/d/OpenSource/python/pyhf/pyhf/tests/test_tensor.py:296: RuntimeWarning: divide by zero encountered in log
assert tb.tolist(
tests/test_tensor.py::test_pdf_calculations_pytorch[pytorch]
tests/test_tensor.py::test_pdf_calculations_pytorch[pytorch64]
/mnt/d/OpenSource/python/pyhf/pyhf/tests/test_tensor.py:342: RuntimeWarning: divide by zero encountered in log
assert tb.tolist(
-- Docs: https://docs.pytest.org/en/stable/warnings.html
----------- coverage: platform linux, python 3.8.6-final-0 -----------
Name Stmts Miss Branch BrPart Cover Missing
-----------------------------------------------------------------------------------
src/pyhf/__init__.py 74 0 36 1 99% 148->151
src/pyhf/_version.py 2 0 0 0 100%
src/pyhf/cli/__init__.py 9 0 0 0 100%
src/pyhf/cli/cli.py 30 0 2 0 100%
src/pyhf/cli/complete.py 13 0 0 0 100%
src/pyhf/cli/infer.py 84 0 34 2 98% 94->100, 217->223
src/pyhf/cli/patchset.py 68 0 8 0 100%
src/pyhf/cli/rootio.py 51 4 4 0 93% 38-39, 68-69
src/pyhf/cli/spec.py 145 0 36 0 100%
src/pyhf/compat.py 34 0 20 0 100%
src/pyhf/constraints.py 134 2 42 2 98% 136, 268
src/pyhf/contrib/__init__.py 0 0 0 0 100%
src/pyhf/contrib/cli.py 26 0 4 0 100%
src/pyhf/contrib/utils.py 25 0 8 0 100%
src/pyhf/contrib/viz/__init__.py 0 0 0 0 100%
src/pyhf/contrib/viz/brazil.py 65 0 34 0 100%
src/pyhf/events.py 40 1 2 0 98% 39
src/pyhf/exceptions/__init__.py 42 0 4 0 100%
src/pyhf/infer/__init__.py 37 0 18 0 100%
src/pyhf/infer/calculators.py 138 0 18 0 100%
src/pyhf/infer/intervals.py 20 0 10 0 100%
src/pyhf/infer/mle.py 27 0 8 0 100%
src/pyhf/infer/test_statistics.py 56 0 22 0 100%
src/pyhf/infer/utils.py 19 0 0 0 100%
src/pyhf/interpolators/__init__.py 30 0 8 0 100%
src/pyhf/interpolators/code0.py 50 0 6 0 100%
src/pyhf/interpolators/code1.py 56 0 6 0 100%
src/pyhf/interpolators/code2.py 60 2 8 2 94% 125, 129
src/pyhf/interpolators/code4.py 84 2 12 2 96% 282, 352
src/pyhf/interpolators/code4p.py 65 17 8 2 68% 32->exit, 50-53, 118-130, 133, 136-137
src/pyhf/mixins.py 29 0 8 0 100%
src/pyhf/modifiers/__init__.py 61 4 22 4 90% 19, 45, 53, 152
src/pyhf/modifiers/histosys.py 44 0 20 0 100%
src/pyhf/modifiers/lumi.py 36 0 14 0 100%
src/pyhf/modifiers/normfactor.py 38 0 14 0 100%
src/pyhf/modifiers/normsys.py 44 0 20 0 100%
src/pyhf/modifiers/shapefactor.py 46 0 22 0 100%
src/pyhf/modifiers/shapesys.py 73 0 32 0 100%
src/pyhf/modifiers/staterror.py 60 1 26 1 98% 127
src/pyhf/optimize/__init__.py 22 0 6 1 96% 34->exit
src/pyhf/optimize/common.py 44 0 22 0 100%
src/pyhf/optimize/mixins.py 54 0 18 0 100%
src/pyhf/optimize/opt_jax.py 24 0 4 0 100%
src/pyhf/optimize/opt_minuit.py 59 0 20 0 100%
src/pyhf/optimize/opt_numpy.py 11 0 2 0 100%
src/pyhf/optimize/opt_pytorch.py 18 0 2 0 100%
src/pyhf/optimize/opt_scipy.py 29 0 12 0 100%
src/pyhf/optimize/opt_tflow.py 18 0 2 0 100%
src/pyhf/parameters/__init__.py 6 0 0 0 100%
src/pyhf/parameters/paramsets.py 48 0 6 0 100%
src/pyhf/parameters/paramview.py 38 1 8 1 96% 89
src/pyhf/parameters/utils.py 31 1 16 1 96% 61
src/pyhf/patchset.py 94 0 16 0 100%
src/pyhf/pdf.py 309 6 113 5 97% 53, 61, 184->152, 492-493, 561, 683->685, 772, 789->791
src/pyhf/probability.py 62 0 10 0 100%
src/pyhf/readxml.py 161 3 79 4 97% 161, 172, 230, 291->282
src/pyhf/simplemodels.py 16 0 0 0 100%
src/pyhf/tensor/__init__.py 34 0 8 0 100%
src/pyhf/tensor/common.py 50 0 20 0 100%
src/pyhf/tensor/jax_backend.py 137 4 2 0 96% 183-186
src/pyhf/tensor/numpy_backend.py 131 1 2 1 98% 171
src/pyhf/tensor/pytorch_backend.py 126 1 8 1 99% 124
src/pyhf/tensor/tensorflow_backend.py 144 2 14 2 97% 51, 160
src/pyhf/utils.py 62 2 6 0 97% 80-81
src/pyhf/workspace.py 218 0 138 0 100%
src/pyhf/writexml.py 147 0 62 6 97% 62->64, 64->66, 68->exit, 71->exit, 130->134, 260->exit
-----------------------------------------------------------------------------------
TOTAL 4008 54 1132 38 98%
Coverage XML written to file coverage.xml
----------------------------------------------------------------------------------------------------- benchmark: 30 tests ------------------------------------------------------------------------------------------------------
Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
test_hypotest[numpy-1_bins] 19.7848 (1.0) 48.1272 (1.0) 27.0100 (1.0) 6.5823 (1.60) 25.1900 (1.0) 5.7502 (1.42) 10;4 37.0234 (1.0) 37 1
test_hypotest[pytorch64-1_bins] 26.1219 (1.32) 75.7475 (1.57) 36.3892 (1.35) 13.9536 (3.40) 30.8150 (1.22) 10.8344 (2.68) 6;5 27.4807 (0.74) 36 1
test_hypotest[numpy_minuit-1_bins] 27.2060 (1.38) 54.4811 (1.13) 36.9694 (1.37) 9.0126 (2.19) 33.6693 (1.34) 14.1051 (3.49) 10;0 27.0494 (0.73) 31 1
test_hypotest[pytorch-1_bins] 27.4284 (1.39) 105.2913 (2.19) 63.8310 (2.36) 25.4281 (6.19) 61.2909 (2.43) 58.2375 (14.43) 20;0 15.6664 (0.42) 37 1
test_hypotest[pytorch-10_bins] 35.1799 (1.78) 116.3208 (2.42) 55.5043 (2.05) 19.0398 (4.63) 55.5804 (2.21) 25.9625 (6.43) 8;1 18.0166 (0.49) 26 1
test_hypotest[pytorch-50_bins] 45.0311 (2.28) 58.7655 (1.22) 49.8611 (1.85) 4.1089 (1.0) 48.4228 (1.92) 4.0366 (1.0) 4;2 20.0557 (0.54) 17 1
test_hypotest[pytorch64-50_bins] 46.1391 (2.33) 64.0453 (1.33) 51.6736 (1.91) 5.3547 (1.30) 50.0986 (1.99) 6.1297 (1.52) 4;1 19.3523 (0.52) 20 1
test_hypotest[pytorch64-10_bins] 49.5083 (2.50) 126.4802 (2.63) 79.3738 (2.94) 31.9488 (7.78) 68.4219 (2.72) 54.6753 (13.54) 2;0 12.5986 (0.34) 8 1
test_hypotest[numpy-10_bins] 58.4172 (2.95) 91.9985 (1.91) 70.2005 (2.60) 8.8179 (2.15) 67.3408 (2.67) 8.1137 (2.01) 4;1 14.2449 (0.38) 15 1
test_hypotest[jax-10_bins] 90.3387 (4.57) 112.3788 (2.34) 99.5199 (3.68) 8.1140 (1.97) 98.7219 (3.92) 8.6773 (2.15) 2;0 10.0482 (0.27) 5 1
test_hypotest[jax-1_bins] 92.3582 (4.67) 125.0590 (2.60) 105.7770 (3.92) 12.3363 (3.00) 102.3147 (4.06) 15.0497 (3.73) 2;0 9.4538 (0.26) 5 1
test_hypotest[pytorch64-100_bins] 94.0925 (4.76) 294.0165 (6.11) 164.8435 (6.10) 77.3308 (18.82) 129.5795 (5.14) 109.3155 (27.08) 2;0 6.0664 (0.16) 10 1
test_hypotest[pytorch-100_bins] 98.9117 (5.00) 262.9148 (5.46) 135.5833 (5.02) 47.2902 (11.51) 125.4204 (4.98) 31.6521 (7.84) 1;1 7.3755 (0.20) 10 1
test_hypotest[jax-50_bins] 102.2609 (5.17) 158.5949 (3.30) 125.1397 (4.63) 23.5677 (5.74) 118.7142 (4.71) 38.4823 (9.53) 1;0 7.9911 (0.22) 5 1
test_hypotest[jax-100_bins] 185.6197 (9.38) 207.1163 (4.30) 194.3032 (7.19) 8.0312 (1.95) 191.5385 (7.60) 8.7026 (2.16) 2;0 5.1466 (0.14) 5 1
test_hypotest[numpy_minuit-10_bins] 227.2144 (11.48) 626.2579 (13.01) 352.8185 (13.06) 166.6141 (40.55) 271.7847 (10.79) 214.4783 (53.13) 1;0 2.8343 (0.08) 5 1
test_hypotest[tensorflow-1_bins] 256.0565 (12.94) 643.8464 (13.38) 371.6760 (13.76) 161.9637 (39.42) 299.6305 (11.89) 196.0115 (48.56) 1;0 2.6905 (0.07) 5 1
test_hypotest[tensorflow-50_bins] 298.5393 (15.09) 593.7750 (12.34) 400.2717 (14.82) 112.8334 (27.46) 367.0265 (14.57) 92.6219 (22.95) 1;1 2.4983 (0.07) 5 1
test_hypotest[numpy-50_bins] 303.2282 (15.33) 558.3785 (11.60) 376.8534 (13.95) 103.2737 (25.13) 342.8512 (13.61) 85.0868 (21.08) 1;1 2.6536 (0.07) 5 1
test_hypotest[tensorflow-10_bins] 326.2780 (16.49) 515.8679 (10.72) 384.3531 (14.23) 76.4867 (18.62) 371.4571 (14.75) 76.1129 (18.86) 1;0 2.6018 (0.07) 5 1
test_hypotest[tensorflow-100_bins] 441.8790 (22.33) 557.8049 (11.59) 489.1155 (18.11) 53.4544 (13.01) 460.9390 (18.30) 93.1795 (23.08) 1;0 2.0445 (0.06) 5 1
test_hypotest[pytorch64-200_bins] 448.0802 (22.65) 490.6658 (10.20) 471.2207 (17.45) 15.4936 (3.77) 473.5339 (18.80) 17.3803 (4.31) 2;0 2.1221 (0.06) 5 1
test_hypotest[pytorch-200_bins] 462.6665 (23.38) 572.5643 (11.90) 501.1189 (18.55) 45.4980 (11.07) 485.3708 (19.27) 65.7251 (16.28) 1;0 1.9955 (0.05) 5 1
test_hypotest[jax-200_bins] 595.7927 (30.11) 713.7046 (14.83) 666.3166 (24.67) 44.0016 (10.71) 668.4596 (26.54) 47.8604 (11.86) 2;0 1.5008 (0.04) 5 1
test_hypotest[numpy-100_bins] 649.0744 (32.81) 984.6628 (20.46) 755.0692 (27.96) 133.6058 (32.52) 725.0901 (28.78) 133.3384 (33.03) 1;0 1.3244 (0.04) 5 1
test_hypotest[tensorflow-200_bins] 803.2371 (40.60) 1,200.1299 (24.94) 1,027.5621 (38.04) 173.8777 (42.32) 1,075.3678 (42.69) 307.4458 (76.16) 1;0 0.9732 (0.03) 5 1
test_hypotest[numpy-200_bins] 1,996.0030 (100.89) 2,890.1447 (60.05) 2,371.8386 (87.81) 330.0225 (80.32) 2,304.8640 (91.50) 367.5288 (91.05) 2;0 0.4216 (0.01) 5 1
test_hypotest[numpy_minuit-50_bins] 2,877.9778 (145.46) 3,202.5976 (66.54) 3,000.8928 (111.10) 120.5578 (29.34) 2,969.5957 (117.89) 97.4655 (24.15) 2;1 0.3332 (0.01) 5 1
test_hypotest[numpy_minuit-100_bins] 11,572.0306 (584.90) 13,233.4888 (274.97) 12,618.3582 (467.17) 682.4598 (166.09) 12,829.6570 (509.32) 1,016.2951 (251.77) 1;0 0.0792 (0.00) 5 1
test_hypotest[numpy_minuit-200_bins] 43,793.0470 (>1000.0) 51,287.9592 (>1000.0) 46,651.4919 (>1000.0) 2,992.7182 (728.36) 46,417.7062 (>1000.0) 4,224.2151 (>1000.0) 1;0 0.0214 (0.00) 5 1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Legend:
Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
OPS: Operations Per Second, computed as 1 / Mean
=============================================== short test summary info ================================================FAILED tests/test_notebooks.py::test_impactplot - papermill.exceptions.PapermillExecutionError:
=================== 1 failed, 1454 passed, 40 skipped, 1 xfailed, 68 warnings in 3122.59s (0:52:02) ==================== |
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You probably didn't miss anything. We just don't include instructions for getting CPython setup on various machines as that becomes way too complicated and user specific so we don't try to address that and just focus on
Yeah we're aware there is an error in the ImpactPlot notebook that we haven't fixed yet as we want to do some more modification there (c.f. Issue #1180) but it is safe to ignore that one error. Though thanks for actually following the instructions in |
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Thanks again, for all the help! |
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Saransh-cpp
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@Saransh-cpp Can you tell us how you installed things? What's your
python -m pip listoutput? It looks like from the existence ofin the trace that things aren't getting installed properly.