1.2.1: cannot build documentation without installing module #25766
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Comments
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I see what is going on. |
betatim
changed the title
|
To build the documentation including the examples, scikit-learn will need to be installed anyways. However if you can find a simple way to build the doc (without the examples) and without installing scikit-learn then why not. |
Issue is that during typical packaging process execution there is no chance to to have module installed ... because module is build from scratch. Biggest obstacle on packaging that way are relative imports because they are forces to have DSOs in the actual source tree.
--- a/doc/conf.py
+++ b/doc/conf.py
@@ -12,6 +12,8 @@
import sys
import os
+sys.path.insert(0, os.path.abspath(".."))
+
import warnings
import re
from datetime import datetimeIf you will look om sphinx example copy.py from https://www.sphinx-doc.org/en/master/usage/configuration.html#example-of-configuration-file you can find that as part of that example
[scikit-learn]$ PYTHONPATH=$PWD/build/$(cd build; ls -1d lib*) sphinx-build <params>Those two adaptations allows open .py files from source tree and DSOs from second location where typical pep build procedure creates DSOs. Benefit of above is that with those adaptations it is possible to build documentation without have installed it and by this have 100% guarantee that produced documentation will be generated not against what is installed (which may be different version) but what is in working source code tree. Most of the python modules which are using DSOs already have above adaptation implemented. |
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Just realised that build fails becauee incorrect module name in The same line is causing that pytest is failing + PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra -m 'not network' --import-mode=importlib
Traceback (most recent call last):
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 774, in import_plugin
__import__(importspec)
File "/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__init__.py", line 81, in <module>
from sklearn import __check_build # noqa: F401
File "/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py", line 50, in <module>
raise_build_error(e)
File "/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py", line 31, in raise_build_error
raise ImportError(
ImportError: No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__check_build:
__init__.py _check_build.cpython-38-x86_64-linux-gnu.so__pycache__
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/usr/bin/pytest", line 8, in <module>
sys.exit(console_main())
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 190, in console_main
code = main()
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 148, in main
config = _prepareconfig(args, plugins)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 329, in _prepareconfig
config = pluginmanager.hook.pytest_cmdline_parse(
File "/usr/lib/python3.8/site-packages/pluggy/_hooks.py", line 265, in __call__
return self._hookexec(self.name, self.get_hookimpls(), kwargs, firstresult)
File "/usr/lib/python3.8/site-packages/pluggy/_manager.py", line 80, in _hookexec
return self._inner_hookexec(hook_name, methods, kwargs, firstresult)
File "/usr/lib/python3.8/site-packages/pluggy/_callers.py", line 55, in _multicall
gen.send(outcome)
File "/usr/lib/python3.8/site-packages/_pytest/helpconfig.py", line 103, in pytest_cmdline_parse
config: Config = outcome.get_result()
File "/usr/lib/python3.8/site-packages/pluggy/_result.py", line 60, in get_result
raise ex[1].with_traceback(ex[2])
File "/usr/lib/python3.8/site-packages/pluggy/_callers.py", line 39, in _multicall
res = hook_impl.function(*args)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 1060, in pytest_cmdline_parse
self.parse(args)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 1348, in parse
self._preparse(args, addopts=addopts)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 1227, in _preparse
self.pluginmanager.consider_preparse(args, exclude_only=False)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 702, in consider_preparse
self.consider_pluginarg(parg)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 728, in consider_pluginarg
self.import_plugin(arg, consider_entry_points=True)
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 776, in import_plugin
raise ImportError(
File "/usr/lib/python3.8/site-packages/_pytest/config/__init__.py", line 774, in import_plugin
__import__(importspec)
File "/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__init__.py", line 81, in <module>
from sklearn import __check_build # noqa: F401
File "/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py", line 50, in <module>
raise_build_error(e)
File "/home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py", line 31, in raise_build_error
raise ImportError(
ImportError: Error importing plugin "sklearn.tests.random_seed": No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /home/tkloczko/rpmbuild/BUILDROOT/python-scikit-learn-1.2.2-2.fc35.x86_64/usr/lib64/python3.8/site-packages/sklearn/__check_build:
__init__.py _check_build.cpython-38-x86_64-linux-gnu.so__pycache__
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform. |
I can't say I have a very good understanding of Linux distro packaging constraints, but would having a It seems like this is done like this on Ubuntu (so probably Debian): |
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Please instead focusing on linux packaging try to focus on output which I've provided you. |
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I am afraid I don't feel your tone is very constructive and I invite you to read our very short code of conduct in particular the part about "friendly and didactic discussions" |
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Could you explain a bit more what the goal is of being able to build the documentation after building the package but without installing it? What is the use-case where this is needed? What does it allow the user to do that is otherwise not possible? Understanding those things will help avoid the X Y problem as well as give a motivation for why to make changes to support it. As an example for why this is needed is that something that one person thinks "would be nicer for me" is highly likely to be "something I consider wrong" for another user. We can't make everyone happy :-/ |
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Please .. in output it is possible to find |
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It is module with two undersores in name but there is no with only one. |
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Gentle ping .. any update about fixing module name? 🤔 + /usr/bin/sphinx-build -n -T -b man docs build/sphinx/man
Running Sphinx v6.2.1
making output directory... done
building [mo]: targets for 0 po files that are out of date
writing output...
building [man]: all manpages
updating environment: [new config] 15 added, 0 changed, 0 removed
reading sources... [100%] testing
WARNING: autodoc: failed to import module 'classifiers' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'data' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'fitness' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'preprocessing' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'preprocessing.feature_selection' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'preprocessing.feature_transform' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'preprocessing.encoding' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'preprocessing.imputation' from module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
WARNING: autodoc: failed to import module 'niaaml'; the following exception was raised:
No module named 'sklearn._check_build'
___________________________________________________________________________
Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
__pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
___________________________________________________________________________
It seems that scikit-learn has not been built correctly.
If you have installed scikit-learn from source, please do not forget
to build the package before using it: run `python setup.py install` or
`make` in the source directory.
If you have used an installer, please check that it is suited for your
Python version, your operating system and your platform.
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
writing... python-niaaml.3 { getting_started changelog installation testing documentation api/index api/niaaml api/data api/classifiers api/preprocessing api/fitness about contributing code_of_conduct } /home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/getting_started.rst:151: WARNING: py:class reference target not found: niaaml.preprocessing.feature_selection.SelectKBest
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/niaaml.rst:1: WARNING: py:mod reference target not found: niaaml
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/data.rst:1: WARNING: py:mod reference target not found: niaaml.data
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/classifiers.rst:1: WARNING: py:mod reference target not found: niaaml.classifiers
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/preprocessing.rst:1: WARNING: py:mod reference target not found: niaaml.preprocessing
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/preprocessing.rst:9: WARNING: py:mod reference target not found: niaaml.preprocessing.feature_selection
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/preprocessing.rst:17: WARNING: py:mod reference target not found: niaaml.preprocessing.feature_transform
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/preprocessing.rst:25: WARNING: py:mod reference target not found: niaaml.preprocessing.encoding
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/preprocessing.rst:33: WARNING: py:mod reference target not found: niaaml.preprocessing.imputation
/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/docs/api/fitness.rst:1: WARNING: py:mod reference target not found: niaaml.fitness
done
build succeeded, 20 warnings.and pytest + PYTHONPATH=/home/tkloczko/rpmbuild/BUILDROOT/python-niaaml-1.1.12-2.fc35.x86_64/usr/lib64/python3.8/site-packages:/home/tkloczko/rpmbuild/BUILDROOT/python-niaaml-1.1.12-2.fc35.x86_64/usr/lib/python3.8/site-packages
+ /usr/bin/pytest -ra -m 'not network'
==================================================================================== test session starts ====================================================================================
platform linux -- Python 3.8.16, pytest-7.3.1, pluggy-1.0.0
rootdir: /home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12
collected 0 items / 17 errors
========================================================================================== ERRORS ===========================================================================================
_____________________________________________________________________ ERROR collecting tests/test_basic_data_reader.py ______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_basic_data_reader.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_basic_data_reader.py:2: in <module>
from niaaml.data import BasicDataReader
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
_____________________________________________________________________ ERROR collecting tests/test_classifier_factory.py _____________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_classifier_factory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_classifier_factory.py:2: in <module>
from niaaml.classifiers import ClassifierFactory, Classifier
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
________________________________________________________________________ ERROR collecting tests/test_classifiers.py _________________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_classifiers.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_classifiers.py:2: in <module>
import niaaml.classifiers as c
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
______________________________________________________________________ ERROR collecting tests/test_csv_data_reader.py _______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_csv_data_reader.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_csv_data_reader.py:2: in <module>
from niaaml.data import CSVDataReader
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
______________________________________________________________________ ERROR collecting tests/test_encoder_factory.py _______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_encoder_factory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_encoder_factory.py:2: in <module>
from niaaml.preprocessing.encoding import EncoderFactory, FeatureEncoder
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
______________________________________________________________________ ERROR collecting tests/test_feature_encoder.py _______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_feature_encoder.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_feature_encoder.py:2: in <module>
from niaaml.preprocessing.encoding import OneHotEncoder, encode_categorical_features
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
_____________________________________________________________________ ERROR collecting tests/test_feature_selection.py ______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_feature_selection.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_feature_selection.py:2: in <module>
import niaaml.preprocessing.feature_selection as fs
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
____________________________________________________________ ERROR collecting tests/test_feature_selection_algorithm_factory.py _____________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_feature_selection_algorithm_factory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_feature_selection_algorithm_factory.py:2: in <module>
from niaaml.preprocessing.feature_selection import (
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
_____________________________________________________________________ ERROR collecting tests/test_feature_transform.py ______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_feature_transform.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_feature_transform.py:2: in <module>
import niaaml.preprocessing.feature_transform as ft
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
____________________________________________________________ ERROR collecting tests/test_feature_transform_algorithm_factory.py _____________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_feature_transform_algorithm_factory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_feature_transform_algorithm_factory.py:2: in <module>
from niaaml.preprocessing.feature_transform import (
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
__________________________________________________________________________ ERROR collecting tests/test_fitness.py ___________________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_fitness.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_fitness.py:3: in <module>
import niaaml.fitness as f
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
______________________________________________________________________ ERROR collecting tests/test_fitness_factory.py _______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_fitness_factory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_fitness_factory.py:2: in <module>
from niaaml.fitness import FitnessFactory, FitnessFunction
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
__________________________________________________________________________ ERROR collecting tests/test_imputer.py ___________________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_imputer.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_imputer.py:2: in <module>
from niaaml.preprocessing.imputation import SimpleImputer, impute_features
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
______________________________________________________________________ ERROR collecting tests/test_imputer_factory.py _______________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_imputer_factory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_imputer_factory.py:2: in <module>
from niaaml.preprocessing.imputation import Imputer, ImputerFactory
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
__________________________________________________________________________ ERROR collecting tests/test_pipeline.py __________________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_pipeline.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_pipeline.py:2: in <module>
from niaaml import Pipeline, OptimizationStats
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
_____________________________________________________________________ ERROR collecting tests/test_pipeline_optimizer.py _____________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_pipeline_optimizer.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_pipeline_optimizer.py:2: in <module>
from niaaml import PipelineOptimizer, Pipeline
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
_________________________________________________________________________ ERROR collecting tests/test_utilities.py __________________________________________________________________________
ImportError while importing test module '/home/tkloczko/rpmbuild/BUILD/NiaAML-1.1.12/tests/test_utilities.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:48: in <module>
from sklearn._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn._check_build'
During handling of the above exception, another exception occurred:
/usr/lib64/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_utilities.py:2: in <module>
from niaaml import ParameterDefinition, MinMax, OptimizationStats, get_bin_index
niaaml/__init__.py:1: in <module>
from niaaml import classifiers
niaaml/classifiers/__init__.py:2: in <module>
from niaaml.classifiers.random_forest import RandomForest
niaaml/classifiers/random_forest.py:2: in <module>
from niaaml.utilities import MinMax
niaaml/utilities.py:1: in <module>
from sklearn.metrics import accuracy_score, precision_score, cohen_kappa_score, f1_score
/usr/lib64/python3.8/site-packages/sklearn/__init__.py:81: in <module>
from sklearn import __check_build # noqa: F401
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:50: in <module>
raise_build_error(e)
/usr/lib64/python3.8/site-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError(
E ImportError: No module named 'sklearn._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib64/python3.8/site-packages/sklearn/__check_build:
E __pycache__ __init__.py _check_build.cpython-38-x86_64-linux-gnu.so
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
================================================================================== short test summary info ==================================================================================
ERROR tests/test_basic_data_reader.py
ERROR tests/test_classifier_factory.py
ERROR tests/test_classifiers.py
ERROR tests/test_csv_data_reader.py
ERROR tests/test_encoder_factory.py
ERROR tests/test_feature_encoder.py
ERROR tests/test_feature_selection.py
ERROR tests/test_feature_selection_algorithm_factory.py
ERROR tests/test_feature_transform.py
ERROR tests/test_feature_transform_algorithm_factory.py
ERROR tests/test_fitness.py
ERROR tests/test_fitness_factory.py
ERROR tests/test_imputer.py
ERROR tests/test_imputer_factory.py
ERROR tests/test_pipeline.py
ERROR tests/test_pipeline_optimizer.py
ERROR tests/test_utilities.py
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 17 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
==================================================================================== 17 errors in 0.47s ===================================================================================== |
|
I was able to build documentation for 1.2.2 with patch which removes all relative imports and perform build procedure like below: /usr/bin/python3 -sBm build -w --no-isolation
PYTHONPATH=$PWD/build/$(cd build; ls -1d lib*) \
/usr/bin/sphinx-build -n -T -b man doc build/sphinx/manHowever with 1.3.0 that patch which was +170KB needs to be rediffed 😞 Remove all relative imports allow take .py files from sklearn/ and DSOs from $PYTHONPATH. The same issue is with test suite. If you want I cen submit PR which will replace relative imports bu full name imports. One more time. It would be rally good to:
As side effect it will solve building documentation without have |
We need an answer to this question before considering a PR. From what I've seen, numerical Python libraries, such as NumPy's docs and SciPy's docs, require the library to be built and installed before building the documentation. As it stands, I am -1 on enabling the documentation to built without installing scikit-learn. |
thomasjpfan
added
Documentation
Needs Decision - Include Feature
You are 100% right in case of BuildRequires: flexiblas-devel
BuildRequires: gcc
BuildRequires: gcc-c++
BuildRequires: gcc-gfortran
BuildRequires: lapack-devel
BuildRequires: python3-devel
BuildRequires: python3dist(build)
BuildRequires: python3dist(cython) >= 0.29.24
BuildRequires: python3dist(installer)
BuildRequires: python3dist(ipython)
BuildRequires: python3dist(setuptools) >= 59.2
BuildRequires: python3dist(matplotlib)
%{?with_loopy_deps:
BuildRequires: python3dist(numpydoc)
BuildRequires: python3dist(scipy)
BuildRequires: python3dist(pydata-sphinx-theme)
BuildRequires: python3dist(sphinx)
BuildRequires: python3dist(sphinx-design)
BuildRequires: python3dist(sphinxcontrib-restbuilder)
BuildRequires: python3dist(sphinx-panels)}
BuildRequires: python3dist(wheel)
[..]
%build
%{set_build_flags} \
BLAS=%{_libdir} \
LAPACK=%{_libdir} \
OPENBLAS=%{_libdir} \
SETUPTOOLS_USE_DISTUTILS=stdlib \
%pyproject_wheel
%{?with_loopy_deps:
PYTHONPATH=$PWD/build/$(cd build; ls -d1 lib*) \
%sphinx_build_man doc/source}To boostrap On building PYTHONPATH=$PWD/build/$(cd build; ls -d1 lib*) \
%sphinx_build_man doc/source}it is all what is necessary to build that module documentation. [tkloczko@pers-jacek SPECS]$ grep -r "from \."; grep -r "import \."| grep -v /doc/
[tkloczko@pers-jacek SPECS]$
[tkloczko@pers-jacek scipy-1.11.1]$ grep -r "from \."; grep -r "import \."| grep -v /doc/
doc/source/release/1.5.0-notes.rst:* `#11623 <https://github.com/scipy/scipy/pull/11623>`__: MAINT: Remove unnecessary 'from __future__ import ...' statements
doc/source/release/1.5.0-notes.rst:* `#11646 <https://github.com/scipy/scipy/pull/11646>`__: MAINT: Remove unnecessary 'from __future__ import ...' statements
scipy/_lib/boost_math/build/Jamfile.v2:import ../../config/checks/config : requires ;
scipy/_lib/boost_math/example/Jamfile.v2:import ../../config/checks/config : requires ;
scipy/_lib/boost_math/reporting/accuracy/Jamfile.v2:import ../../../config/checks/config : requires ;
scipy/_lib/boost_math/reporting/performance/Jamfile.v2:import ../../../config/checks/config : requires ;
scipy/_lib/boost_math/reporting/performance/Jamfile.v2:import ../../../predef/check/predef
scipy/_lib/boost_math/test/Jamfile.v2:import ../../config/checks/config : requires ;
scipy/_lib/boost_math/tools/Jamfile.v2:import ../../config/checks/config : requires ;
scipy/fftpack/tests/test_import.py:the form `from scipy.fftpack import ...`, so that a simple replacement
scipy/fftpack/tests/test_import.py: regexp = r"\s*from.+\.fftpack import .*\n"
scipy/linalg/_generate_pyx.py:# cimport ..linalg.cython_blas as cython_blas
scipy/linalg/_generate_pyx.py:# cimport ..linalg.cython_lapack as cython_lapack
scipy/linalg/_generate_pyx.py:# cimport ..linalg.cython_blas as cython_blas
scipy/linalg/_generate_pyx.py:# cimport ..linalg.cython_lapack as cython_lapack
scipy/linalg/_matfuncs.py: # Avoid circular import ... this is OK, right?If you will look on above closer you will find that actually there is no here relative imports. From that ponit of view It is yet another aspect of using relative imports. I have already packaged [tkloczko@pers-jacek SPECS]$ ls -l python-*spec|wc -l
1170python modules as rpm packages. I can tell you that using in the code relative imports was one of the top 5 cause of some issues found on packaging especially on testing stage in case of modules with DSOs. |
|
There isn't any new information on why this would be worth doing. So I propose we close this issue. New topics/questions are best discussed in a new issue. |
|
So you don;t want to support "test as installed" methodology which is now widely used in Fedora and Debian? 🤔 |
|
I don't know if it is worth making a change to support these things or not. This is because:
I still can't find a clear answer to this question. Without knowing why you want to do what you are trying to do (build the docs without installing scikit-learn, at least I assume this is what you are trying to do) it is impossible to make a judgement on whether this is something we want to support and how much effort it is possible to invest in it. As far as I can tell you are asking for at least two changes: (1) moving all the tests to a new location and (2) not using relative imports in the code base. These are two very big asks that would require a lot of effort to implement and potentially quite disruptive. This means without a good understanding of why someone might desire this, and how many others there are like them it is impossible to make a decision. |
Answer is very simple .. I'm packaging your module as rpm package.
If you will look closer on spreaded in different locations tests/ subdirectories you will find that NONE of the code in that directories uses relative imports -> code in those directories can be freely moved around without additional changes. |
|
Thanks for explaining. Let's see what others from @scikit-learn/core-devs think about moving tests and not using relative imports to make it easier to package scikit-learn as a RPM. Please correct me if I am wrong regarding what you are asking for. |
In case for example distributions like Debian or Fedora testing and produce documentation in some unified form still is not obligatory. [tkloczko@pers-jacek SPECS]$ ls -1 python-*.spec | wc -l; grep ^%pytest python-*.spec | wc -l; grep %sphinx_build_man python-*.spec | wc -l
1171
1154
603Which means that In 1171 packaged python modules 1154 are using pytest and 603 produces and packages sphinx based documentation as man page. [tkloczko@pers-jacek SPECS]$ man python-<tab><tab>
python-asttokens python-jedi python-pyproject-hooks
python-babel python-jeepney python-pytest
python-backcall python-jinja2 python-pytest-mock
python-build python-jsonschema python-rapidfuzz
python-cachecontrol python-jsonschema-specifications python-referencing
python-cffi python-keyring python-requests
python-charset-normalizer python-markupsafe python-requests_toolbelt
python-cleo python-more-itertools python-secretstorage
python-dateutil python-msgpack python-setuptools
python-decorator python-numpy python-six
python-distlib python-parso python-sphinx-theme-alabaster
python-dulwich python-pdfminer python-tomlkit
python-filelock python-pkginfo python-traitlets
python-html5lib python-platformdirs python-urllib3
python-importlib-metadata python-pluggy python-wcwidth
python-importlib_resources python-prompt_toolkit python-webencodings
python-installer python-ptyprocess python-wheel
python-ipython python-pygments python-zipp
python-jaraco-classes python-pypdf |
|
Reading the thread, I'll try to summarize points which I think are relevant to us PackagingIt is possible to package the library w/o any changes, you just need to change the way you build and create the packages, e.g. create a separate env for each package build. So this is not a motivation for a change. Other distros already package scikit-learn. Relative ImportsSome interesting points are raised in #25766 (comment) regarding extra syscalls. I'm not sure if they're true, I'd need to check with how the module finder works exactly. I know many other libraries use absolute imports, but I find it confusing, as the imports will end up importing from a different location if you're not careful about where you start your python process. Apparently this is not an issue for those packages. I might be convinced with the right argument to move to absolute imports (I do find them cleaner to read at least). Moving TestsMoving tests outside of the source tree might have marginal benefits like not including them in our distributions and have a cleaner source tree. But for any project the size of our project these things are not trivial to do since they introduce a lot of friction for a while. I personally don't have a strong preference on whether we should move them or not. Misc
One can always create an environment and install there, so being a non-root user is a non-issue in python. In fact, I personally strongly discourage people from installing any of the packages in the ecosystem as
In rare occasions we import from those tests in other tests, so that'd need to be changed, but not a big deal I'd say. I personally don't mind it either way, except that packaging w/o the tests included would be easier if we move them somewhere else. |
|
LGTM 👍 I can only add few additional pieces to that picture that python modules which are building DSOs (Dynamic Shared Objects) are kind of special cases. Only way to build module and documentation during which sphinx will be loading module DSOs is to use PS. If you don't have time to prepare patch which will remove replace use imports I can submit PR for that 😋 |
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Describe the bug
Looks like something is wrong and I cannot build docuemtation without installing module.
Steps/Code to Reproduce
N/A
Expected Results
It should be possible to build documentation out of only what is in source tree a d withoit have installed module.
Actual Results
Versions
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