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Welcome to the SCIL lab documentation!

Our lab works in diffusion MRI, from the acquisition sequences and local reconstruction to tractography and its usages in applied contexts, including tractometry.

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Here, you will find a summary of the tools we develop, and some clues on how we do things in the lab, from using Linux to developing code.

arriving/welcome arriving/useful_links arriving/our_team

intro_to/explore_os intro_to/explore_python intro_to/explore_git intro_to/explore_software intro_to/explore_virtual_machines intro_to/explore_nextflow intro_to/code_with_nextflow

our_tools/scilpy our_tools/flows our_tools/tractoflow our_tools/recobundles our_tools/other_pipelines our_tools/machine_learning

tools/dipy tools/cbrain

coding/python coding/scilpy coding/git

heavy/storage heavy/computing

other/conferences other/scholarships