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There is a small issue with the command scil_image_math.py mean $rev_b0 $rev_b0 --data_type float32 -f in the topup process. If the rev_b0 is in 3D (which happens to be my case quite often), the scilpy script returns an error and tractoflow continues with the unchanged $rev_b0. This is only a minor issue, since all it implies is that the dtype of $rev_b0 remains unchanged (so probably int16 instead of float32). This is a small detail that only affects the Ants command right after, but I suggest to add a scil_image_math.py convert command to be sure that the processes are always with float32.
The text was updated successfully, but these errors were encountered:
There is a small issue with the command
scil_image_math.py mean $rev_b0 $rev_b0 --data_type float32 -f
in the topup process. If the rev_b0 is in 3D (which happens to be my case quite often), the scilpy script returns an error and tractoflow continues with the unchanged $rev_b0. This is only a minor issue, since all it implies is that the dtype of $rev_b0 remains unchanged (so probably int16 instead of float32). This is a small detail that only affects the Ants command right after, but I suggest to add ascil_image_math.py convert
command to be sure that the processes are always with float32.The text was updated successfully, but these errors were encountered: