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Python quit unexpectedly-interpolate (Trac #1199) #1726

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scipy-gitbot opened this issue Apr 25, 2013 · 3 comments
Closed

Python quit unexpectedly-interpolate (Trac #1199) #1726

scipy-gitbot opened this issue Apr 25, 2013 · 3 comments
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defect A clear bug or issue that prevents SciPy from being installed or used as expected Migrated from Trac scipy.interpolate

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@scipy-gitbot
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Original ticket http://projects.scipy.org/scipy/ticket/1199 on 2010-06-16 by trac user aint, assigned to unknown.

I just installed scipy.
If I run the test;
scipy.test('full')
or type;
from scipy import interpolate

I get the prompt "Python quit unexpectedly

Here is the report:

Process: Python [190]
Path: /Library/Frameworks/Python.framework/Versions/2.6/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: ??? (???)
Code Type: X86 (Native)
Parent Process: Python [170]

Date/Time: 2010-06-16 11:11:17.494 +0200
OS Version: Mac OS X 10.6.2 (10C2234)
Report Version: 6

Interval Since Last Report: 1955323 sec
Crashes Since Last Report: 13
Per-App Crashes Since Last Report: 5
Anonymous UUID: 4F2F1584-1A97-4556-99A4-2E1063C21C0B

Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000
Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Thread 0 Crashed: Dispatch queue: com.apple.main-thread
0 ??? 0000000000 0 + 0
1 org.python.python 0x000dd4a7 PyImport_LoadDynamicModule + 167
2 org.python.python 0x000dae33 load_module + 227
3 org.python.python 0x000db35d import_submodule + 301
4 org.python.python 0x000db5b9 load_next + 201
5 org.python.python 0x000dbf61 PyImport_ImportModuleLevel + 337
6 org.python.python 0x000b4d0f builtin___import_ + 159
7 org.python.python 0x0000eee5 PyObject_Call + 85
8 org.python.python 0x000ba76e PyEval_CallObjectWithKeywords + 78
9 org.python.python 0x000bdd00 PyEval_EvalFrameEx + 9680
10 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
11 org.python.python 0x000c25a7 PyEval_EvalCode + 87
12 org.python.python 0x000d9a9c PyImport_ExecCodeModuleEx + 188
13 org.python.python 0x000da73c load_source_module + 540
14 org.python.python 0x000db35d import_submodule + 301
15 org.python.python 0x000db5b9 load_next + 201
16 org.python.python 0x000dbf61 PyImport_ImportModuleLevel + 337
17 org.python.python 0x000b4d0f builtin___import__ + 159
18 org.python.python 0x0000eee5 PyObject_Call + 85
19 org.python.python 0x000ba76e PyEval_CallObjectWithKeywords + 78
20 org.python.python 0x000bdd00 PyEval_EvalFrameEx + 9680
21 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
22 org.python.python 0x000c25a7 PyEval_EvalCode + 87
23 org.python.python 0x000d9a9c PyImport_ExecCodeModuleEx + 188
24 org.python.python 0x000da73c load_source_module + 540
25 org.python.python 0x000db194 load_package + 468
26 org.python.python 0x000db35d import_submodule + 301
27 org.python.python 0x000db5b9 load_next + 201
28 org.python.python 0x000dbfb3 PyImport_ImportModuleLevel + 419
29 org.python.python 0x000b4d0f builtin___import__ + 159
30 org.python.python 0x0000eee5 PyObject_Call + 85
31 org.python.python 0x000ba76e PyEval_CallObjectWithKeywords + 78
32 org.python.python 0x000bdd00 PyEval_EvalFrameEx + 9680
33 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
34 org.python.python 0x000c25a7 PyEval_EvalCode + 87
35 org.python.python 0x000d9a9c PyImport_ExecCodeModuleEx + 188
36 org.python.python 0x000da73c load_source_module + 540
37 org.python.python 0x000db35d import_submodule + 301
38 org.python.python 0x000db5b9 load_next + 201
39 org.python.python 0x000dbf61 PyImport_ImportModuleLevel + 337
40 org.python.python 0x000b4d0f builtin___import__ + 159
41 org.python.python 0x0000eee5 PyObject_Call + 85
42 org.python.python 0x000ba76e PyEval_CallObjectWithKeywords + 78
43 org.python.python 0x000bdd00 PyEval_EvalFrameEx + 9680
44 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
45 org.python.python 0x000c25a7 PyEval_EvalCode + 87
46 org.python.python 0x000d9a9c PyImport_ExecCodeModuleEx + 188
47 org.python.python 0x000da73c load_source_module + 540
48 org.python.python 0x000db194 load_package + 468
49 org.python.python 0x000db35d import_submodule + 301
50 org.python.python 0x000db907 ensure_fromlist + 439
51 org.python.python 0x000dc39d PyImport_ImportModuleLevel + 1421
52 org.python.python 0x000b4d0f builtin___import__ + 159
53 org.python.python 0x0000eee5 PyObject_Call + 85
54 org.python.python 0x000ba76e PyEval_CallObjectWithKeywords + 78
55 org.python.python 0x000bdd00 PyEval_EvalFrameEx + 9680
56 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
57 org.python.python 0x000c0bd5 PyEval_EvalFrameEx + 21669
58 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
59 org.python.python 0x0003f8f6 function_call + 166
60 org.python.python 0x0000eee5 PyObject_Call + 85
61 org.python.python 0x000be0dc PyEval_EvalFrameEx + 10668
62 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
63 org.python.python 0x000c04fc PyEval_EvalFrameEx + 19916
64 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
65 org.python.python 0x000c25a7 PyEval_EvalCode + 87
66 org.python.python 0x000e8a1f PyRun_StringFlags + 287
67 org.python.python 0x000e8b1e PyRun_SimpleStringFlags + 78
68 org.python.python 0x000f942e Py_Main + 1486
69 org.python.python 0x00001f82 0x1000 + 3970
70 org.python.python 0x00001ea9 0x1000 + 3753

Thread 1: Dispatch queue: com.apple.libdispatch-manager
0 libSystem.B.dylib 0x93d740ea kevent + 10
1 libSystem.B.dylib 0x93d74804 _dispatch_mgr_invoke + 215
2 libSystem.B.dylib 0x93d73cc3 _dispatch_queue_invoke + 163
3 libSystem.B.dylib 0x93d73a68 _dispatch_worker_thread2 + 234
4 libSystem.B.dylib 0x93d734f1 _pthread_wqthread + 390
5 libSystem.B.dylib 0x93d73336 start_wqthread + 30

Thread 2:
0 libSystem.B.dylib 0x93d89066 select$DARWIN_EXTSN$NOCANCEL + 10
1 libSystem.B.dylib 0x93e2211b select + 92
2 select.so 0x007db6e0 select_select + 480
3 org.python.python 0x000c0315 PyEval_EvalFrameEx + 19429
4 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
5 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
6 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
7 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
8 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
9 org.python.python 0x0003f8f6 function_call + 166
10 org.python.python 0x0000eee5 PyObject_Call + 85
11 org.python.python 0x00020ce6 instancemethod_call + 422
12 org.python.python 0x0000eee5 PyObject_Call + 85
13 org.python.python 0x000bec67 PyEval_EvalFrameEx + 13623
14 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
15 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
16 org.python.python 0x0003f8f6 function_call + 166
17 org.python.python 0x0000eee5 PyObject_Call + 85
18 org.python.python 0x00020ce6 instancemethod_call + 422
19 org.python.python 0x0000eee5 PyObject_Call + 85
20 org.python.python 0x000bec67 PyEval_EvalFrameEx + 13623
21 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
22 org.python.python 0x0003f8f6 function_call + 166
23 org.python.python 0x0000eee5 PyObject_Call + 85
24 org.python.python 0x00020ce6 instancemethod_call + 422
25 org.python.python 0x0000eee5 PyObject_Call + 85
26 org.python.python 0x00075a47 slot_tp_init + 87
27 org.python.python 0x00074470 type_call + 176
28 org.python.python 0x0000eee5 PyObject_Call + 85
29 org.python.python 0x000bec67 PyEval_EvalFrameEx + 13623
30 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
31 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
32 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
33 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
34 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
35 org.python.python 0x0003f8f6 function_call + 166
36 org.python.python 0x0000eee5 PyObject_Call + 85
37 org.python.python 0x000be0dc PyEval_EvalFrameEx + 10668
38 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
39 org.python.python 0x000c0c96 PyEval_EvalFrameEx + 21862
40 org.python.python 0x000c248d PyEval_EvalCodeEx + 2109
41 org.python.python 0x0003f8f6 function_call + 166
42 org.python.python 0x0000eee5 PyObject_Call + 85
43 org.python.python 0x00020ce6 instancemethod_call + 422
44 org.python.python 0x0000eee5 PyObject_Call + 85
45 org.python.python 0x000ba76e PyEval_CallObjectWithKeywords + 78
46 org.python.python 0x000fbc7f t_bootstrap + 63
47 libSystem.B.dylib 0x93d7afbd _pthread_start + 345
48 libSystem.B.dylib 0x93d7ae42 thread_start + 34

Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x015b5020 ebx: 0x02d712fb ecx: 0x03026a00 edx: 0x015b5020
edi: 0x01515a10 esi: 0x0031d6f8 ebp: 0xbfff90d8 esp: 0xbfff900c
ss: 0x0000001f efl: 0x00010246 eip: 0x00000000 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00000000

Binary Images:
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0x963af000 - 0x963b2ff7 libCoreVMClient.dylib ??? (???) <891FBE51-E3A8-E1CD-D9FB-9A8F4AFD3650> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
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0x96db5000 - 0x96dc1ff7 libkxld.dylib ??? (???) <6BFEF643-B6A4-B106-49CB-551A67F92736> /usr/lib/system/libkxld.dylib
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0x96ff4000 - 0x96ff8ff7 IOSurface ??? (???) /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
0x96ff9000 - 0x97009ff7 libsasl2.2.dylib ??? (???) /usr/lib/libsasl2.2.dylib
0x9700a000 - 0x9701ffff com.apple.ImageCapture 6.0 (6.0) <0E86F45E-E656-9015-7AD4-A2C5F8D8A2FA> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x97020000 - 0x971a2fe7 libicucore.A.dylib ??? (???) /usr/lib/libicucore.A.dylib
0x972c0000 - 0x9736fff3 com.apple.ColorSync 4.6.2 (4.6.2) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x97370000 - 0x973dfff7 libvMisc.dylib ??? (???) <59243A8C-2B98-3E71-8032-884D4853E79F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x973e0000 - 0x97431ff7 com.apple.HIServices 1.8.0 (???) <4EACE6E4-6E8B-5787-F36A-7958BB885629> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x9745a000 - 0x9748dff7 com.apple.AE 496.1 (496.1) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
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0x97546000 - 0x975a6fe7 com.apple.CoreText 3.1.0 (???) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreText.framework/Versions/A/CoreText
0x975a7000 - 0x975a7ff7 com.apple.Accelerate.vecLib 3.5 (vecLib 3.5) <3E039E14-2A15-56CC-0074-EE59F9FBB913> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
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0x984bf000 - 0x98ca24b7 com.apple.CoreGraphics 1.536.13 (???) <2D7E3989-A709-FDA9-E1B6-794FBF8BB986> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
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0x98e60000 - 0x98e88ff7 libxslt.1.dylib ??? (???) <769EF4B2-C1AD-73D5-AAAD-1564DAEA77AF> /usr/lib/libxslt.1.dylib
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0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???) /usr/lib/libSystem.B.dylib

Model: iMac11,1, BootROM IM111.0034.B00, 4 processors, Intel Core i7, 2.8 GHz, 8 GB, SMC 1.54f33
Graphics: ATI Radeon HD 4850, ATI Radeon HD 4850, PCIe, 512 MB
Memory Module: global_name
AirPort: spairport_wireless_card_type_airport_extreme (0x168C, 0x8F), Atheros 9280: 2.1.9.5
Bluetooth: Version 2.2.5f6, 2 service, 1 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Serial ATA Device: ST31000528ASQ, 931.51 GB
Serial ATA Device: OPTIARC DVD RW AD-5680H
USB Device: Hub, 0x0424 (SMSC), 0x2514, 0xfa100000
USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1006, 0xfa140000
USB Device: Apple Optical USB Mouse, 0x05ac (Apple Inc.), 0x0304, 0xfa141000
USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x0220, 0xfa142000
USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0xfa110000
USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8215, 0xfa111000
USB Device: Internal Memory Card Reader, 0x05ac (Apple Inc.), 0x8403, 0xfa120000
USB Device: Hub, 0x0424 (SMSC), 0x2514, 0xfd100000
USB Device: d2 quadra (button), 0x059f (LaCie), 0x1014, 0xfd140000
USB Device: Built-in iSight, 0x05ac (Apple Inc.), 0x8502, 0xfd110000
USB Device: IR Receiver, 0x05ac (Apple Inc.), 0x8242, 0xfd120000
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@pv wrote on 2010-06-16

  1. Quite likely, you are trying to run Scipy with a wrong version of Numpy. Check that import numpy; print numpy.__version__, numpy.__file__ point to the same Numpy used to compile Scipy.

  2. How did you install Scipy? From binaries, or did you compile it by yourself.

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trac user randomsample wrote on 2011-06-24

Replying to [comment:1 pv]:

  1. Quite likely, you are trying to run Scipy with a wrong version of Numpy. Check that import numpy; print numpy.__version__, numpy.__file__ point to the same Numpy used to compile Scipy.

  2. How did you install Scipy? From binaries, or did you compile it by yourself.

I'm not the OP but this was very helpful. Though I still found some irregularities. In PyDev in Eclipse I encountered this problem, but I could import scipy fine from idle and the command line. If I looked at scipy.numpyversion and numpy.version, they matched in Eclipse but not on the command line (the opposite I expected). When I removed the older version of numpy and re-configured the interpreter, Eclipse began to work.

I still don't quite understand what happened with the versions, but the problem is fixed, so I'm happy!

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@pv wrote on 2011-06-24

Closing this issue -- no new info seems forthcoming from the OP.

tonysyu pushed a commit to tonysyu/scipy that referenced this issue May 9, 2013
@mathnathan @dlax
DOC: removed (can be None) for myfprime in line_search_wolfe2 (ticket s…
4e78ee8 
…cipy#1726)
tonysyu pushed a commit to tonysyu/scipy that referenced this issue May 9, 2013
@mathnathan @dlax
BUG: compute gfk before using it in line_search_wolfe2 (ticket scipy#…
6f8adf1 
…1726)
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defect A clear bug or issue that prevents SciPy from being installed or used as expected Migrated from Trac scipy.interpolate
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