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ENH: stats: add nonparametric one-sample quantile test and CI #12680

Merged
merged 83 commits into from
Aug 4, 2023
Merged

ENH: stats: add nonparametric one-sample quantile test and CI #12680

merged 83 commits into from
Aug 4, 2023

Commits on Aug 4, 2020

  1. mwe of the function, tests added but does not work yet

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Commits on Aug 5, 2020

  1. added self to contrib list"

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  2. added function name to __init__ to appear in the online doc

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  3. function is ready, docstring and tests to finish

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Commits on Aug 7, 2020

  1. ENH: added non-parametric confidence intervals for quantiles into sci… 

    …py.stats
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  2. Merge branch 'master' into confint

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  3. fixed docstring

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  4. merge new commits

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  5. Merge branch 'confint' of github.com:romain-jacob/scipy into confint

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  6. fixed pep8 typos and doctest typos

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Commits on Aug 10, 2020

  1. improved efficiency by using binom.isf 

    fixed minor documentation things
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Commits on Aug 11, 2020

  1. added None return to the docstring

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  2. fixed docstring bug

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Commits on Aug 17, 2020

  1. docstring updates

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  2. Merge branch 'master' of https://github.com/scipy/scipy into confint

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Commits on Aug 30, 2020

  1. Merge branch 'master' of https://github.com/scipy/scipy into confint

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  2. reverted content of THANKS.txt

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Commits on Oct 7, 2020

  1. added reference to a related R package

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Commits on Oct 8, 2020

  1. fixed doctring lines being too long

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Commits on Oct 9, 2020

  1. corrected line length issues

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Commits on Jan 6, 2021

  1. update version number 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  2. corrected typo in docstring 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  3. corrected typo in doctring 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  4. typo in doctring 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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Commits on Mar 22, 2021

  1. Merge branch 'master' into confint

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Commits on May 27, 2021

  1. pass on docstring

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  2. Updated unit test for confint_quantile

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  3. merge master into confint

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  4. MAINT: stats: confint: revert undesired changes to stats.py

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Commits on May 29, 2021

  1. DOC: stats: confint_quantile: add whitespace back to docstrings

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Commits on May 31, 2021

  1. DOC: stats: confint_quantile: add carriage return back to docstringsU… 

    …pdate scipy/stats/stats.py

Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  2. DOC: stats: confint_quantile: add carriage return back to docstringsU… 

    …pdate scipy/stats/stats.py

Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  3. DOC: stats: confint_quantile: add carriage return back to docstringsU… 

    …pdate scipy/stats/stats.py

Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  4. DOC: fixed docstring test

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  5. DOC: fixed doctest

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  6. DOC: fixed doctest

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Commits on Feb 28, 2022

  1. merge main

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  2. MAINT: added back the confint code

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Commits on Aug 6, 2022

  1. Merge branch 'main' into confint

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  2. MAINT: stats.confint_quantile: fix merge issues

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Commits on Aug 29, 2022

  1. STY: stats.confint_quantile: PEP8

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  2. Merge remote-tracking branch 'upstream/main' into confint

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Commits on Sep 11, 2022

  1. ENH: stats.quantile_test: add quantile test and move CI to method of … 

    …result object

[skip ci]
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Commits on Sep 12, 2022

  1. MAINT: stats.quantile_test: adjust (correct?) confidence_interval 

    [skip ci]
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  2. Merge remote-tracking branch 'upstream/main' into confint 

    [skip azp] [skip actions]
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Commits on Sep 13, 2022

  1. DOC: stats.quantile_test: update documentation 

    [skip azp] [skip actions]
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Commits on Nov 18, 2022

  1. Merge branch 'main' into confint

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Commits on Dec 14, 2022

  1. FIX: correct p-values for the Quantile test

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Commits on Feb 12, 2023

  1. Merge branch 'main' into confint

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Commits on Mar 11, 2023

  1. some PEP8 formatting 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  2. comment update 

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  3. Cleanup 

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  4. cleanup 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  5. Fixed comment typo 

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  6. doc typo 

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  7. doc typo 

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Commits on Mar 14, 2023

  1. added IV test for quantile_test

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  2. wip tests for QuantileTest

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Commits on Mar 21, 2023

  1. cleaned up the alternative IV test

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Commits on May 24, 2023

  1. unitests for QuantileTest

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Commits on Jun 5, 2023

  1. PEP8 pass

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  2. added example for the confidence_interval method

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Commits on Jun 6, 2023

  1. Merge remote-tracking branch 'upstream/main' into confint

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Commits on Jun 8, 2023

  1. Apply suggestions from code review

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Commits on Jun 13, 2023

  1. updated Notes section of the docstring

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Commits on Jun 14, 2023

  1. added examples

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Commits on Jun 15, 2023

  1. TST: stats.quantile_test: adjust tests

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Commits on Jun 16, 2023

  1. Fix typo in the example 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  2. Text improvement in the example 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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  3. Improvement example text 

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  4. Simplification iv test 

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  5. Fixing typo in comments 

    Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>
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Commits on Jun 19, 2023

  1. Merge branch 'confint' into gh12680

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  2. Merge pull request #1 from mdhaber/gh12680 

    TST: stats.quantile_test: adjust tests [skip ci]
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  3. MAINT: stats.quantile_test: rewriting to follow Conover's book [skip ci] 

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  4. TST: stats.quantile_test: use output of R implem in test [skip ci]

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  5. MAINT:stats.quantile_test: using dataclass instead of tuple_bunch [sk… 

    …ip ci]
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  6. TST: stats.quantile_test: adding Conover examples as tests [skip ci]

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Commits on Jun 20, 2023

  1. MAINT: stats.quantile_test: more adjustments per review

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Commits on Jul 8, 2023

  1. Merge remote-tracking branch 'upstream/main' into confint

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  2. TST: stats.quantile_test: strengthen test of CIs vs p-values

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Commits on Jul 20, 2023

  1. DOC: Docstring updates + change result attributes 

    DOC: Sync docstring for test with actual implementation

DOC: Indent hypotheses [skip actions]

DOC: Fix docstring formatting [skip actions]

DOC: Try to fix another sphinx issue [skip actions]

TST: Fix hardcoded value in doctest [skip actions]

TST: More fix for doctest [skip actions]

DOC: More thrashing [skip actions]

DOC: sphinx was confused by `p`th [skip actions]

DOC: try to deal with more sphinx weirdness [skip actions]

DOC: Change pth to latex [skip actions] [skip cirrus]

DOC: Make p-value consistent in docs [skip actions] [skip cirrus]

DOC: More docstring cleanup [skip actions] [skip cirrus]

Update scipy/stats/_stats_py.py

Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>

Update scipy/stats/_stats_py.py [skip actions] [skip cirrus]

Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>

Remove blank line (squash)

MAINT: Make result contain only one statistic + info

MAINT: Bring some lines to 79 chars or less

MAINT: Fix statistic not set for alternative two-side

MAINT: Update statistic_type -> statistic_sign

TST: Fix doctests [skip actions] [skip cirrus]

MAINT: Change to statistic_type 1, 2

MAINT: Fix formatting in tests

Apply suggestions from code review [skip cirrus] [skip actions]

Co-authored-by: Matt Haberland <mhaberla@calpoly.edu>

DOC: Documentation fixes [skip actions] [skip cirrus]

DOC: documentation fixes [skip actions] [skip cirrus]

DOC: More doc fixes [skip actions] [skip cirrus]

DOC: Adjust formatting for bullet list [skip actions] [skip cirrus]

DOC: Adjust subscript to superscript in pth [skip cirrus] [skip actions]

DOC: Remove extraneous blank line [skip actions] [skip cirrus]

DOC: Unbold hypotheses [skip cirrus] [skip actions]
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  2. DOC: More doc fixes [skip actions] [skip cirrus]

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