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@sct-pipeline

sct-pipeline

This site gathers various pipelines compatible with the Spinal Cord Toolbox (SCT) for processing MRI data.

Popular repositories Loading

  1. gm-challenge gm-challenge Public

    Spinal cord gray matter imaging challenge

    Python 8 3

  2. bavaria-quebec bavaria-quebec Public

    Bavaria (TUM) and Quebec (Polytechnique) collaboration on a project on spinal cord MS lesion segmentation.

    Shell 6 1

  3. contrast-agnostic-softseg-spinalcord contrast-agnostic-softseg-spinalcord Public

    Contrast-agnostic spinal cord segmentation project with softseg

    Python 4 3

  4. fmri-segmentation fmri-segmentation Public

    Repository for the project on automatic spinal cord segmentation based on fMRI EPI data

    Python 4 1

  5. ukbiobank-spinalcord-csa ukbiobank-spinalcord-csa Public

    Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.

    Python 3 1

  6. gm-challenge-data gm-challenge-data Public

    Dataset for the gray matter acquisition challenge

    3 1

Repositories

Showing 10 of 37 repositories
  • contrast-agnostic-softseg-spinalcord Public

    Contrast-agnostic spinal cord segmentation project with softseg

    sct-pipeline/contrast-agnostic-softseg-spinalcord’s past year of commit activity
    Python 4 MIT 3 28 1 Updated Jul 22, 2024
  • fmri-segmentation Public

    Repository for the project on automatic spinal cord segmentation based on fMRI EPI data

    sct-pipeline/fmri-segmentation’s past year of commit activity
    Python 4 MIT 1 25 (1 issue needs help) 0 Updated Jul 15, 2024
  • spine-park Public

    Pipeline for multicontrast analysis in PD patients

    sct-pipeline/spine-park’s past year of commit activity
    Shell 0 MIT 0 8 0 Updated Jul 9, 2024
  • mri-linac-longitudinal-registration Public

    This project investigates the stability of spinal cord positioning across MRI-LINAC sessions

    sct-pipeline/mri-linac-longitudinal-registration’s past year of commit activity
    0 MIT 0 1 0 Updated Jun 29, 2024
  • levin-stroke Public

    Repository for levin-stroke project.

    sct-pipeline/levin-stroke’s past year of commit activity
    Shell 0 MIT 0 1 0 Updated Jun 22, 2024
  • bavaria-quebec Public

    Bavaria (TUM) and Quebec (Polytechnique) collaboration on a project on spinal cord MS lesion segmentation.

    sct-pipeline/bavaria-quebec’s past year of commit activity
    Shell 6 MIT 1 8 0 Updated May 2, 2024
  • sct-pipeline/dcm-metric-normalization’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Mar 26, 2024
  • epi-ap-pa-registration Public

    FMRI AP-PA registration to quantify EPI distortion

    sct-pipeline/epi-ap-pa-registration’s past year of commit activity
    Jupyter Notebook 0 0 2 1 Updated Nov 6, 2023
  • pmj-based-csa Public

    CSA measure based on distance from pontomedullary junction (PMJ)

    sct-pipeline/pmj-based-csa’s past year of commit activity
    Python 2 MIT 0 2 0 Updated Aug 23, 2023
  • venus-integration Public

    Code to process data for integrating acquisition planning with VENUS

    sct-pipeline/venus-integration’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 22, 2023