- Added {meth}
anndata.AnnData.to_memory
for returning an in memory object from a backed one {pr}470
{pr}542
{smaller}V Bergen
{smaller}I Virshup
- {meth}
anndata.AnnData.write_loom
now writesobs_names
andvar_names
using theIndex
's.name
attribute, if set {pr}538
{smaller}I Virshup
- Fixed bug where
np.str_
column names errored at write time {pr}457
{smaller}I Virshup
- Fixed "value.index does not match parent’s axis 0/1 names" error triggered when a data frame is stored in obsm/varm after obs_names/var_names is updated {pr}
461
{smaller}G Eraslan
- Fixed
adata.write_csvs
whenadata
is a view {pr}462
{smaller}I Virshup
- Fixed null values being converted to strings when strings are converted to categorical {pr}
529
{smaller}I Virshup
- Fixed handling of compression key word arguments {pr}
536
{smaller}I Virshup
- Fixed copying a backed
AnnData
from changing which file the original object points at {pr}533
{smaller}ilia-kats
- Fixed a bug where calling
AnnData.concatenate
anAnnData
with no variables would error {pr}537
{smaller}I Virshup
- Passing positional arguments to {func}
anndata.read_loom
besides the path is now deprecated {pr}538
{smaller}I Virshup
- {func}
anndata.read_loom
argumentsobsm_names
andvarm_names
are now deprecated in favour ofobsm_mapping
andvarm_mapping
{pr}538
{smaller}I Virshup