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New analysis tool: A simple analysis tool you have been using and are missing in sc.tools?
[x ] New plotting function: A kind of plot you would like to seein sc.pl?
External tools: Do you know an existing package that should go into sc.external.*?
Other?
...
It would be nice to have something like https://github.com/powellgenomicslab/Nebulosa to plot sparse genes.
On one hand, ordering with highest value on top (top plot) does not always work as what is below top layer is hidden and decreasing point size to combat this is not always good if different regions of UMAP are differently dense, thus creating white patches. On the other hand, random ordering (middle plot) can be hard to look at for sparse genes.
The gene on the plot is highly correlated with pattern from the bottom plot, but this is not so clear when plotting the gene alone.
Sort order=True
Random cell ordering
Strongly correlated with
The text was updated successfully, but these errors were encountered:
sc.tools
?sc.pl
?sc.external.*
?...
It would be nice to have something like https://github.com/powellgenomicslab/Nebulosa to plot sparse genes.
On one hand, ordering with highest value on top (top plot) does not always work as what is below top layer is hidden and decreasing point size to combat this is not always good if different regions of UMAP are differently dense, thus creating white patches. On the other hand, random ordering (middle plot) can be hard to look at for sparse genes.
The gene on the plot is highly correlated with pattern from the bottom plot, but this is not so clear when plotting the gene alone.
Sort order=True
Random cell ordering
Strongly correlated with
The text was updated successfully, but these errors were encountered: