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error in dpt_scatter when 'groups' parameter set #32

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snyquist2 opened this issue Aug 22, 2017 · 2 comments
Closed

error in dpt_scatter when 'groups' parameter set #32

snyquist2 opened this issue Aug 22, 2017 · 2 comments

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@snyquist2
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Hello,
When I call 'dpt_scatter' with the groups parameter I get the following error:
NameError: name 'names' is not defined

It looks like this is from line 230 in scanpy/plotting/ann_data.py and the 'names' variable just doesn't exist.
I'm assuming it should just be 'groups'?

Thanks,
Sarah

@falexwolf
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Hi Sarah,
thanks for the note and sorry about that; would you install a stable release from PyPi in the meanwhile pip install scanpy? I'm currently rewriting quite substantial parts and yes, this is clearly a bug I caused on the weekend; testing will also be more extensive in the future so that this stuff does happen anymore. This kind of stuff will also not happen on master branch in the future; but this rewriting goes along with building some documentation and this builds from master...
Cheers,
Alex

@falexwolf
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Could you pull the current version (0.2.7) from github or install it via pip? Everything should be back to normal now.

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