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[CLOSED] new model of the dispersion parameter #10

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jeff-regier opened this issue Jun 12, 2018 · 3 comments
Closed

[CLOSED] new model of the dispersion parameter #10

jeff-regier opened this issue Jun 12, 2018 · 3 comments

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@jeff-regier
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Issue by jeff-regier
Friday Mar 30, 2018 at 16:59 GMT
Originally opened as https://github.com/YosefLab/scVI-dev/issues/5
@jeff-regier
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Comment by jeff-regier
Monday May 28, 2018 at 19:46 GMT

@Edouard360 Is this done in #100 ? Or is there something more to do?

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Comment by Edouard360
Tuesday May 29, 2018 at 06:25 GMT

Yes it is:
actually, I wanted to see the improvement on the 10x dataset with 11 pure populations:
The plot below shows that taking batch index into account effectively improves modelling, but that adding batch-wise dispersion doesn't give additional improvement.

batch dispersion

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Comment by jeff-regier
Tuesday May 29, 2018 at 18:37 GMT

Interesting. Let's talk to Nir about the implications

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