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Refactor Xenium + Visium paths and use better names #39

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LucaMarconato opened this issue Jun 27, 2023 · 1 comment
Open
2 tasks

Refactor Xenium + Visium paths and use better names #39

LucaMarconato opened this issue Jun 27, 2023 · 1 comment

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@LucaMarconato
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LucaMarconato commented Jun 27, 2023 •
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  • all the paths used in notebooks 00_xenium_and_visium.ipynb, 01_xenium_and_visium.ipynb and 02_xenium_and_visium.ipynb should be placed in a config.py file
  • sandbox.zarr was a poorly chosen name, rename it to manual_annotations.zarr. I have already made a copy in the S3 bucket of that file (so that now both sandbox.zarr.zip and manual_annotations.zarr.zip are present), so one needs just to adjust the notebooks.
@LucaMarconato LucaMarconato mentioned this issue Jun 27, 2023
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@melonora
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@LucaMarconato Please see last comment in #36

@npeschke npeschke mentioned this issue Jul 25, 2023
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