acknowledgements

[sdtaylor]

Use of data and software, either by citation or end of manuscript acknowledgement

Data

Acknowledgements

• PRISM
• Harvard Phenology Data
• Jornada
• Hubbard Brook
• National Phenology Network
• HJ andrews experimental forest

Citations

• PRISM
• Harvard Phenology Data
• Jornada
• Hubbard Brook
• National Phenology Network
• HJ andrews experimental forest

Software

• R
• Python

Packages (R)

• dplyr
• tidyr
• ggplot2
• lubridate
• prism
• raster
• sp

Packages (Python)

• pandas
• scipy
• numpy
• mpi4py

[sdtaylor]

HJ Andrews https://andrewsforest.oregonstate.edu/acknowledgements

Data were provided by the HJ Andrews Experimental Forest research program, funded by the National Science Foundation's Long-Term Ecological Research Program (DEB 1440409), US Forest Service Pacific Northwest Research Station, and Oregon State University.

Schulze, M. 2017. Vegetative Phenology observations at the Andrews Experimental Forest, 2009 - Present. Long-Term Ecological Research. Forest Science Data Bank, Corvallis, OR. [Database]. Available: http://andlter.forestry.oregonstate.edu/data/abstract.aspx?dbcode=TV075 (4 Sep 2017)

[sdtaylor]

Jornada https://jornada.nmsu.edu/lter/data/policies

Data sets were provided by the Jornada Basin Long-Term Ecological Research (LTER) project. Funding for these data was provided by the U.S. National Science Foundation (Grant DEB-1235828).

[sdtaylor]

Harvard Forest http://harvardforest.fas.harvard.edu/data-archive/information-management-policy

No specific policy. just asks for a citation
O'Keefe J. 2015. Phenology of Woody Species at Harvard Forest since 1990. Harvard Forest Data Archive: HF003.

[sdtaylor]

Hubbard Brook http://data.hubbardbrook.org/data/dataset.php?id=51

Bailey A. 2016. Hubbard Brook Experimental Forest (US Forest Service): Routine Seasonal Phenology Measurements, 1989 - present. Environmental Data Initiative. https://doi.org/10.6073/pasta/37733410ba1372aaffb40ce952adc48d. (7 March 2017)

the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station, Newtown Square, PA.

email sent about this. they just say to use the citation and don't mention a grant number

[sdtaylor]

NPN https://www.usanpn.org/terms#DataAttribution

Data were provided by the USA National Phenology Network and the many participants who contribute to its Nature’s Notebook program

Also has the richardson citation

specific NPN data citation

@Misc{npndata,
  Author = {{USA National Phenology Network}},
  Howpublished = {USA-NPN, Tucson, Arizona, USA. Data set accessed 04/20/2017 at \url{http://doi.org/10.5066/F78S4N1V}},
  Title = {Plant and Animal Phenology Data. Data type: Status and Intensity. 01/01/2009-04/31/2017 for Region: 49.9375°, -66.4791667° (UR); 24.0625°, -125.0208333° (LL).},
  Year = {2017},
}

[sdtaylor]

The text for all the software citations. Using all the software citations breaks things somehow and sharelatex switches over to numbers instead of author-year

We performed all analysis using both the R and Python programming languages \citep{rcitation, python}. Primary R packages used in the analysis included dplyr \citep{dplyr}, tidyr \citep{tidyr}, ggplot2 \citep{ggplot2}, lubridate \citep{lubridate}, prism \citep{prism}, raster \citep{rasterR}, and sp \citep{sp1}. Primary Python packages included SciPy \citep{scipy}, NumPy \citep{numpy}, Pandas \citep{pandas}, and MPI for Python \citep{mpi4py}.

[sdtaylor]

done