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@seaflow-uw

SeaFlow@UW

SeaFlow@UW seeks to create reproducible analytical methods to uniformly process and curate SeaFlow data

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  1. popcycle popcycle Public

    Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

    R 9 8

  2. flowmix flowmix Public

    Forked from sangwon-hyun/flowmix

    Statistical analysis of ocean flow cytometry data.

    HTML

  3. bayesian-matrix-population-model bayesian-matrix-population-model Public

    Forked from CBIOMES/bayesian-matrix-population-model

    A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration

    Jupyter Notebook

  4. fsc-poc-calibration fsc-poc-calibration Public

    Conversion from light scattering measured by SeaFlow to carbon per cell

    R 1

  5. seaflow-sfl seaflow-sfl Public

    SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

    HTML 2 2

  6. fsc-size-calibration fsc-size-calibration Public

    Conversion from light scattering measured by SeaFlow to cell diameter

    R 3

Repositories

Showing 10 of 14 repositories
  • mpm-workflow Public

    SeaFlow matrix population model workflow

    seaflow-uw/mpm-workflow’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 14, 2024
  • popcycle Public

    Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

    seaflow-uw/popcycle’s past year of commit activity
    R 9 MIT 8 7 0 Updated Jun 14, 2024
  • seaflowpy Public

    Python package with library and CLI tool for analyzing SeaFlow data

    seaflow-uw/seaflowpy’s past year of commit activity
    Python 5 GPL-3.0 3 1 0 Updated May 30, 2024
  • seaflow-website Public

    seaflow data website

    seaflow-uw/seaflow-website’s past year of commit activity
    TeX 0 MIT 0 0 0 Updated May 29, 2024
  • seaflow-sfl Public

    SFL files contain metadata for each SeaFlow files recorded during the cruise. These metadata are provided by the ship's data broadcast system and are being copied to the SeaFlow instrument as is.

    seaflow-uw/seaflow-sfl’s past year of commit activity
    HTML 2 MIT 2 0 1 Updated Jan 26, 2024
  • seaflow-filter Public
    seaflow-uw/seaflow-filter’s past year of commit activity
    R 0 MIT 1 0 0 Updated Jan 26, 2024
  • realtime-dbs Public

    SeaFlow realtime analysis parameter databases

    seaflow-uw/realtime-dbs’s past year of commit activity
    0 MIT 1 0 0 Updated Jan 18, 2024
  • seaflow-virtualcore Public

    Calibration of SeaFlow's Virtual Core

    seaflow-uw/seaflow-virtualcore’s past year of commit activity
    R 1 MIT 0 0 0 Updated Jan 8, 2024
  • seaflog Public

    Command-line tool and Go library for parsing SeaFlow instrument v1 log files

    seaflow-uw/seaflog’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Jan 4, 2024
  • SeaFlow_cruise_report Public

    knitR and supporting documents to build an R and LaTeX cruise report for SeaFlow data.

    seaflow-uw/SeaFlow_cruise_report’s past year of commit activity
    TeX 1 1 0 0 Updated Oct 17, 2023
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