0.99.4: Fix getLRR example.

sean-cho · Aug 3, 2016 · c85590d · c85590d
1 parent e8fd0c2
commit c85590d
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: Epicopy
 Type: Package
 Title: Get CNV information from 450K array
-Version: 0.99.3
+Version: 0.99.4
 Date: 2015-02-25
 Authors@R: c(
     person('Sean, Soonweng', 'Cho', email = 'sean.cho@jhmi.edu', 

diff --git a/R/getLRR.R b/R/getLRR.R
@@ -54,15 +54,10 @@
 #' @examples
 #' 
 #' # Get LRR
-#' normix <- tsh$Sample_Group == 'Normal'
+#' load('data/data_vignette.rda')
 #' # Median is used for quick calculation
-#' test <- getLRR(tset, Normals = normix, Ref = 'median')
+#' res_lrr <- getLRR(epi_rg, Normals = 'thyroid, Ref = 'median')
 #' 
-#' # Segment data with 4 cores
-#' test.tum <- test[,!normix]
-#' test.seg <- LRRtoCNA(LRR = test.tum, ncores = 4L)
-#' head(test.seg$output)
-#'
 #' @seealso \code{\link[minfi]{preprocessFunnorm}} 
 #'    \code{\link[minfi]{RGChannelSet-class}}
 #'