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A lightweight introduction to NextFlow, a workflow description language and engine for (mainly) bioinformatics workflows. Leverages notebooks for easy teaching.

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seandavi/nextflow_on_jupyter

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nextflow_on_jupyter

This repo is meant to teach the basic concepts involved with setting up and beginning to use the NextFlow workflow language and system.

To use, simply clone this repo and then start up the jupyter notebook. The notebook uses a bash kernel, so you can copy the command lines to the terminal if you'd rather not use jupyter.

The scripts in the 0X_example... directories are self-contained and are very simple and not too useful nextflow workflows. They are meant to serve as scaffolding from which to start to build real workflows.

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A lightweight introduction to NextFlow, a workflow description language and engine for (mainly) bioinformatics workflows. Leverages notebooks for easy teaching.

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