Skip to content

seantma/bspmview

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

BSPMVIEW

MATLAB Program for playing with fMRI statistical maps

Online documentation can be found here: http://spunt.github.io/bspmview/.

Requires that Statistical Parametric Mapping (SPM; Wellcome Trust Centre for Neuroimaging; www.fil.ion.ucl.ac.uk/spm/) be in your MATLAB search path. It has only been tested on SPM8/SPM12 operating in MATLAB 2014b. It requires a number of supporting utility functions and data files that should have been included in the distribution of BSPMVIEW. When BSPMVIEW is launched, it will look for these files in a folder called "supportfiles" that should be contained in the same folder as BSPMVIEW. You can use the following DOI to cite use of this software: DOI

OPTIONAL INPUTS

ol: filename for statistical image to overlay ul: filename for anatomical image to use as underlay

COMMAND LINE USAGE EXAMPLES


>> bspmview                               % open dialogue for selecting overlay
>> S = bspmview;                          % returns struct 'S' containing GUI obj handles
>> bspmview('spmT_0001.img')              % overlay on default underlay
>> bspmview('spmT_0001.img','T1.nii')     % overlay on 'T1.nii'

CREDITS

This software heavily relies on functions contained within the SPM software, and is essentially an attempt to translate some of it into a simpler and more user-friendly format. In addition, this software was inspired by and in some cases uses code from two other statistical image viewers: XJVIEW.m by Xu Cui, Jian Li, and Xiaowei Song (http://www.alivelearn.net/xjview8/developers/), and FIVE.m by Aaron P. Schultz (http://mrtools.mgh.harvard.edu/index.php/Main_Page). This also employs some of the functionality of PEAK_NII.m by Donald McLaren (http://www.nmr.mgh.harvard.edu/~mclaren/ftp/Utilities_DGM/). Finally, several contributions to the MATLAB File Exchange (http://www.mathworks.com/matlabcentral/fileexchange/) are called by the code. These are included in the "supporting files" folder that should have been included in the distribution of the main BSPMVIEW function.

------ Copyright (C) Bob Spunt, California Institute of Technology ------

* Email: spunt@caltech.edu * Created: 2014-09-27 * Version: 20170411

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see: http://www.gnu.org/licenses/.

About

MATLAB program for viewing 3D fMRI statistical images

Resources

Stars

Watchers

Forks

Packages

No packages published

Languages

  • MATLAB 97.5%
  • HTML 2.4%
  • Java 0.1%