Skip to content

Latest commit

 

History

History
82 lines (59 loc) · 3.65 KB

NEWS.md

File metadata and controls

82 lines (59 loc) · 3.65 KB
Raw
title
changeLog

Rseb update

v0.1.0 - January 5th 2021

First releasing


v0.1.1 - January 6th 2021

  • Some bug-fixing
  • Added the function read.computeMatrix.file
  • Optimized function plot.density.profile to be compatibile with outputs from read.computeMatrix.file

v0.1.2 - January 7th 2021

  • Optimization of IGVsnap function
  • Added the function pkg.check

v0.1.3 - January 11th 2021

  • Optimization of volcano function: parameter 'font_size' added
  • Bugs fixed in computeMatrix.deeptools
  • Added function build.bed
  • Added R version dependence (set to R >= 3.2.0) to be compatible with dplyr

v0.1.4 - January 15th 2021

  • Bugs fixed in plot.density.profile
  • Bugs fixed in build.bed
  • Bugs fixed in intersect.bedtools
  • Updated dependencies required (labeling)
  • Added functions uniform.x.axis and uniform.y.axis

v0.1.5 - January 29th 2021

  • DE.status now supports also NAs for the FoldChange
  • Added functions color.gradient and is.color
  • Bugs fixed in volcano

v0.1.6 - February 10th 2021

  • Added the function actualize and integrated in each function to check everytime if Rseb package is up-to-date
  • New functions plot.density.summary, floating.ceiling, floating.floor
  • Updated the dependencies to add rvcheck and curl
  • Optimization for different labeling and better handle of Y-axis autoscale in plot.density.profile function
  • Optimization of uniform.x.axis and uniform.y.axis with the new functions floating.ceiling and floating.floor and to support a given number of digits

v0.1.7 - February 20th 2021

  • Updated information in DESCRIPTION file
  • Updated the dependencies to require an R version >= 4.0.0
  • Moved all "depending" packages in "imports" to avoid attaching of all packages. Morover, added ggpubr and removed labeling
  • Bug fixing in actualize and uniform.x.axis functions
  • Optimization for better definition of the breaks in the functions uniform.x.axis and uniform.y.axis
  • Optimization of package handling for plot.density.summary and plot.density.profile
  • Optimized color handling for summary plots in plot.density.summary function
  • Now computation and plot of the statistical mean comparisons is available for plot.density.summary
  • In the plot.density.summary function a density profile corresponding to the summary plot subset range is generated
  • The data.table of plot.density.summary now contains also the orignal positions used to generate the matrix
  • Optimization of IGVsnap function and improvment of relative manual information
  • IGVsnap allows the addiction of a delay time between snap generation


Contributors

contributors