Add: Taxonomy database information to meta

segrelab · May 22, 2021 · 0a63e03 · 0a63e03
1 parent d955616
commit 0a63e03
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diff --git a/micone/pipelines/modules/tax_assignment/assign/blast.nf b/micone/pipelines/modules/tax_assignment/assign/blast.nf
@@ -11,6 +11,7 @@ process blast {
     script:
         meta.tax_assignment = "blast"
         reference_sequences = params.tax_assignment.assign['blast']['reference_sequences']
+        meta.taxonomy_database = reference_sequences
         tax_map = params.tax_assignment.assign['blast']['tax_map']
         max_accepts = params.tax_assignment.assign['blast']['max_accepts']
         perc_identity = params.tax_assignment.assign['blast']['perc_identity']

diff --git a/micone/pipelines/modules/tax_assignment/assign/naive_bayes.nf b/micone/pipelines/modules/tax_assignment/assign/naive_bayes.nf
@@ -11,6 +11,7 @@ process naive_bayes {
     script:
         meta.tax_assignment = "naive_bayes"
         classifier = params.tax_assignment.assign['naive_bayes']['classifier']
+        meta.taxonomy_database = classifier
         confidence = params.tax_assignment.assign['naive_bayes']['confidence']
         ncpus = params.tax_assignment.assign['naive_bayes']['ncpus']
         template 'tax_assignment/assign/assign_taxonomy_naivebayes.sh'