Add: Basic templates for user workflow setup

micone/pipelines/workflow.config

@@ -0,0 +1,15 @@
+// Process specific configuration
+includeConfig './configs/process.config'
+
+// Module specific configuration
+includeConfig './configs/denoise_cluster.config'
+includeConfig './configs/tax_assignment.config'
+includeConfig './configs/otu_processing.config'
+includeConfig './configs/network_inference.config'
+
+// User configuration
+// Refer: documentation for details
+
+params {
+
+}

micone/pipelines/workflow.nf

@@ -0,0 +1,18 @@
+// Include workflows
+include { denoise_cluster_workflow } from './modules/denoise_cluster/denoise_cluster_workflow.nf'
+include { tax_assignment_workflow } from './modules/tax_assignment/tax_assignment_workflow.nf'
+include { otu_processing_workflow } from './modules/otu_processing/otu_processing_workflow.nf'
+include { network_inference_workflow } from './modules/network_inference/network_inference_workflow.nf'
+
+
+// Include data ingestion functions
+
+// TODO: Channels here
+
+workflow {
+    input_channel \
+        | denoise_cluster_workflow \
+        | tax_assignment_workflow \
+        | otu_processing_workflow \
+        | network_inference_workflow
+}