Fix: Cluster specific options updated

segrelab · Nov 4, 2021 · e710cc5 · e710cc5
1 parent 1a9edfd
commit e710cc5
Show file tree

Hide file tree

Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/micone/pipelines/configs/profiles.config b/micone/pipelines/configs/profiles.config
@@ -10,9 +10,10 @@ profiles {
 
     cluster {
         process.executor = 'sge'
-        process.queue = 'long'
-        process.memory = '10GB'
+        // process.queue = 'long'
+        process.memory = '16GB'
         process.scratch = true
+        process.clusterOptions = "-P ${params.project} -l h_rt=24:00:00"
     }
 
     cloud {

diff --git a/micone/pipelines/nextflow.config b/micone/pipelines/nextflow.config
@@ -2,6 +2,7 @@
 // vim:ft=groovy
 
 params.conda_dir = ""
+params.project = ""
 
 // Process specific configuration
 includeConfig './nf_micone/configs/process.config'
@@ -19,4 +20,5 @@ includeConfig './nf_micone/configs/network_inference.config'
 
 params {
     paired_end = false
+    output_dir = "outputs"
 }