Analysis code provided for mouse in vitro thyroid scRNA-seq dataset Romitti, Eski et al., 2021
The data can also be accessed at Shiny App
Analysis folder contains codes for the analysis performed both in Seurat and Scanpy.
Files folder contains:
- documents necessary to run the pipeline (cell cycle gene list and immature/mature thyrocyte metadata info)
- metadata document to get cell information (cell type, leiden clusters and UMAP coordinates)
- normalized counts