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basil test fails due to ref.fa path #9

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hepcat72 opened this issue Dec 19, 2018 · 0 comments
Open

basil test fails due to ref.fa path #9

hepcat72 opened this issue Dec 19, 2018 · 0 comments

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@hepcat72
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The test script for basil appears to compare the vcf files without accounting for a different value for the reference path:

diff /Users/rleach/local/miniconda3/conda-bld/anise_basil_1545249514348/work/test/01/basil.vcf /var/folders/8d/z84mms353qb2n0r3n2jhww0m0000gq/T/tmp.z7rXj0Zi/basil.vcf
3c3
< ##reference=/home/manuel/Development/anise_basil/test/01/ref.fa
---
> ##reference=/Users/rleach/local/miniconda3/conda-bld/anise_basil_1545249514348/work/test/01/ref.fa
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@hepcat72