Method selection over CLI does not work properly

[eldariont]

Hi,

for me, the selection of specific junction detection methods (probably the same for clustering methods) via the CLI does not work properly. As introduced with #45, the set of methods to use can be specified via the -m option. But when I add seqan3::debug_stream << args.methods << '\n'; after the argument parsing:

> build/bin/detect_breakends simulated.minimap2.hg19.coordsorted_cutoff.sam insertion_file_out.fasta -m1
[1,2,3,4,1]
...
The read pair method is not yet implemented.
The read depth method is not yet implemented.
...

Apparently, the parser just appends values to the already initialized std::vector<uint8_t> methods{1, 2, 3, 4}; and executes all methods even though -m1 was called.

Best
David

[Irallia]

I have already noticed the problem and have a solution lying around.