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[FEATURE] SeqAn3: Develop a simple VCF parser. #9

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Irallia opened this issue Sep 24, 2020 · 0 comments · Fixed by #46

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Irallia commented Sep 24, 2020

VCF: Variant Call Format, a file format standard in bioinformatics.
https://en.wikipedia.org/wiki/Variant_Call_Format

Simple means a parser in which the content of the columns is not checked (e.g. without specific info fields).
We will do this in a follow up issue.

Irallia changed the title ~~[FEATURE] SeqAn: Develop a simple VCF parser.~~ [FEATURE] SeqAn3: Develop a simple VCF parser.

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[FEATURE EPIC] Call SNPs, Indels & SVs with iGenVar #36

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Irallia mentioned this issue

Add a skeleton VCF parser which can print variants in VCF output. #46

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Irallia assigned joshuak94

Irallia closed this as completed in #46

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