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Implement seqan3::sam_record::reference_sequence #292

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14 tasks
marehr opened this issue Feb 27, 2021 · 0 comments
Open
14 tasks

Implement seqan3::sam_record::reference_sequence #292

marehr opened this issue Feb 27, 2021 · 0 comments

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@marehr
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marehr commented Feb 27, 2021 •
edited

Description

To construct the seqan3::sam_record::alignment we internally get the reference_sequence by using the id-sequence-map from the alignment header (if present) and the seqan3::sam_record::reference_id. Our sam_record could give a convenience accessor to that sequence.

Acceptance Criteria

  • test 1
  • test 2
  • test 3

Tasks

  • task 1
  • task 2
  • task 3

Definition of Done

  • Implementation and design approved
  • Unit tests pass
  • Test coverage = 100%
  • Microbenchmarks added and/or affected microbenchmarks < 5% performance drop
  • API documentation added
  • Tutorial/teaching material added
  • Test suite compiles in less than 30 seconds (on travis)
  • Changelog entry added
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@marehr