ICE with Seqan 3.0.2 and Debian's GCC 10.2.0-16 gcc snapshot #2236
Labels
bug
faulty or wrong behaviour of code
external bug
Bugs that need to fixed upstream by dependencies.
Comments
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Debian's gcc-10 package in their development distribution is up to "git 20201029 from the gcc-10 branch." |
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Bug filed with gcc: https://gcc.gnu.org/PR97745 courtesy Matthias Klose |
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Using the latest gcc-snapshot (1:20201023-1), the ICE is replaced with a build error |
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Thank you! Interesting, every time I tried to contact Matthias Klose he never replied, it's good to know that we can contact him. |
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Any news for this issue? |
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Hi @tillea, the original reported issue is a compiler issue https://gcc.gnu.org/PR97745, but as you can see, the bug seems to be already fixed. So from that point it seems to be a problem with the debian gcc version. @tillea Can you give me more details on what is failing for you? Maybe you have a variant of this problem that isn't reported yet. |
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@mr-c Can you remove the |
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I tried a couple of things: Compiler is g++
gcc-11 is known to fail currently, see seqan/product_backlog#106 for progress. |
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Thanks! I'm doing a full build + test run using GCC 10.2.1-3 + seqan3 3.0.2 now |
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Yep, gcc 10 works now, thanks! |
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Platform
Description
How to repeat the problem
Build the seqan3 tests as part of making the seqan3 Debian package
Expected behaviour
No errors
Actual behaviour
/build/seqan3-3.0.2+ds/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp:999:38: internal compiler error: in tsubst_decl, at cp/pt.c:14666
[561/570] /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.2+ds/test/include -I/build/seqan3-3.0.2+ds/include -isystem /build/seqan3-3.0.2+ds/submodules/sdsl-lite/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -std=c++17 -fconcepts -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -pthread -MD -MT search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o -MF search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o.d -o search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o -c /build/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp FAILED: search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o /usr/lib/ccache/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -Ivendor/googletest/googletest/include -I/build/seqan3-3.0.2+ds/test/include -I/build/seqan3-3.0.2+ds/include -isystem /build/seqan3-3.0.2+ds/submodules/sdsl-lite/include -g -O2 -fdebug-prefix-map=/build/seqan3-3.0.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fuse-ld=gold -DNDEBUG -O3 -std=c++17 -fconcepts -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Werror -pthread -MD -MT search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o -MF search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o.d -o search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o -c /build/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp In file included from /build/seqan3-3.0.2+ds/test/unit/search/helper.hpp:16, from /build/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp:11: /build/seqan3-3.0.2+ds/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp: In instantiation of ‘seqan3::bi_fm_index_cursor::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >:: [with auto:45 = long unsigned int]’: /usr/include/range/v3/functional/invoke.hpp:139:34: required by substitution of ‘template constexpr decltype ((F&&)(f)((Args&&(ranges::invoke_fn::operator()::args))...)) ranges::invoke_fn::operator()(F&&, Args&& ...) const [with F = seqan3::bi_fm_index_cursor::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >::&; Args = {long unsigned int}]’ /usr/include/range/v3/functional/concepts.hpp:36:5: required from ‘constexpr ranges::transform_view())), Fun> ranges::views::transform_base_fn::operator()(Rng&&, Fun) const [with Rng = ranges::iota_view; Fun = seqan3::bi_fm_index_cursor::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >::; decltype (ranges::views::all(declval())) = ranges::iota_view]’ /usr/include/range/v3/functional/invoke.hpp:139:34: required by substitution of ‘template constexpr decltype ((F&&)(f)((Args&&(ranges::invoke_fn::operator()::args))...)) ranges::invoke_fn::operator()(F&&, Args&& ...) const [with F = const ranges::views::transform_base_fn&; Args = {ranges::iota_view, const seqan3::bi_fm_index_cursor::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >::&}]’ /usr/include/range/v3/functional/invoke.hpp:174:24: required by substitution of ‘template using invoke_result_t = decltype (ranges::invoke(declval(), (declval)()...)) [with Fun = const ranges::views::transform_base_fn&; Args = {ranges::iota_view, const seqan3::bi_fm_index_cursor::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >::&}]’ /usr/include/range/v3/functional/bind_back.hpp:113:13: required by substitution of ‘template constexpr ranges::invoke_result_t::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >::&> ranges::detail::bind_back_fn_::lazy_locate, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> > >:: >::operator()(CallArgs&& ...) const & [with CallArgs = {ranges::iota_view}]’ /usr/include/range/v3/functional/invoke.hpp:139:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /build/seqan3-3.0.2+ds/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp:999:14: required from ‘auto seqan3::bi_fm_index_cursor::lazy_locate() const requires (index_t::text_layout_mode) == seqan3::text_layout::single [with index_t = seqan3::bi_fm_index, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> >]’ /build/seqan3-3.0.2+ds/include/seqan3/search/fm_index/concept.hpp:179:22: required from ‘struct seqan3::detail::search_configurator::select_search_result, seqan3::bi_fm_index, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> >, long unsigned int>’ /build/seqan3-3.0.2+ds/include/seqan3/search/detail/search_configurator.hpp:171:15: required from ‘static auto seqan3::detail::search_configurator::configure_algorithm(const configuration_t&, const index_t&) [with query_t = std::pair >; configuration_t = seqan3::configuration; index_t = seqan3::bi_fm_index, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> >]’ /build/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp:48:110: required from ‘void search_trivial(const index_t&, const query_t&, seqan3::detail::search_param, delegate_t&&) [with index_t = seqan3::bi_fm_index, sdsl::rank_support_v<1, 1>, sdsl::select_support_scan<>, sdsl::select_support_scan<0>, sdsl::byte_tree<> >, 16, 10000000, sdsl::sa_order_sa_sampling<>, sdsl::isa_sampling<>, sdsl::plain_byte_alphabet> >; query_t = std::vector; delegate_t = test_search_scheme_edit, 1> >::&]’ /build/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp:287:31: required from ‘void test_search_scheme_edit(const search_scheme_t&, size_t, uint64_t) [with search_scheme_t = std::array, 1>; size_t = long unsigned int; uint64_t = long unsigned int]’ /build/seqan3-3.0.2+ds/test/unit/search/search_scheme_algorithm_test.cpp:331:82: required from here /build/seqan3-3.0.2+ds/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp:999:38: internal compiler error: in tsubst_decl, at cp/pt.c:14666 999 | | std::views::transform([*this, _offset = offset()] (auto sa_pos) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 | { | ~ 1001 | return locate_result_value_type{0u, _offset - index->fwd_fm.index[sa_pos]}; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 | }); | ~ 0x6635bc tsubst_decl ../../src/gcc/cp/pt.c:14666 0xc1b878 tsubst_expr(tree_node*, tree_node*, int, tree_node*, bool) ../../src/gcc/cp/pt.c:18002 0xc1a8eb tsubst_expr(tree_node*, tree_node*, int, tree_node*, bool) ../../src/gcc/cp/pt.c:17900 0xc18c8c tsubst_expr(tree_node*, tree_node*, int, tree_node*, bool) ../../src/gcc/cp/pt.c:18219 0xc16c01 instantiate_decl(tree_node*, bool, bool) ../../src/gcc/cp/pt.c:25824 0xb4b8aa maybe_instantiate_decl ../../src/gcc/cp/decl2.c:5370 0xb4df60 maybe_instantiate_decl ../../src/gcc/cp/decl2.c:5555 0xb4df60 mark_used(tree_node*, int) ../../src/gcc/cp/decl2.c:5581 0xaa0152 build_over_call ../../src/gcc/cp/call.c:9093 0xaa4fa1 build_op_call_1 ../../src/gcc/cp/call.c:4872 0xaa4fa1 build_op_call(tree_node*, vec**, int) ../../src/gcc/cp/call.c:4901 0xc5eb5e finish_call_expr(tree_node*, vec**, bool, bool, int) ../../src/gcc/cp/semantics.c:2689 0xc28f98 tsubst_copy_and_build(tree_node*, tree_node*, int, tree_node*, bool, bool) ../../src/gcc/cp/pt.c:20115 0xc2afb4 tsubst(tree_node*, tree_node*, int, tree_node*) ../../src/gcc/cp/pt.c:15946 0xc357aa tsubst_function_type ../../src/gcc/cp/pt.c:14932 0xc2abb0 tsubst(tree_node*, tree_node*, int, tree_node*) ../../src/gcc/cp/pt.c:15753 0xc3963c tsubst_function_decl ../../src/gcc/cp/pt.c:13787 0xc22f0f tsubst_decl ../../src/gcc/cp/pt.c:14230 0xc337d9 instantiate_template_1 ../../src/gcc/cp/pt.c:20871 0xc42fcb instantiate_template(tree_node*, tree_node*, int) ../../src/gcc/cp/pt.c:20928seqan3_3.0.2+ds-3_amd64.build.txt.gz
ccGx7lnc.out.txt.gz
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