Merge pull request #79 from sequence-dev/mcflugen/add-python-3.12

Add support for Python 3.12

.github/workflows/docs.yml

@@ -26,7 +26,7 @@ jobs:
               micromamba-version: latest
               environment-name: testing
               create-args: >-
-                python=3.11
+                python=3.12
                 mamba
                 pandoc
                 nox

.github/workflows/lint.yml

@@ -16,10 +16,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
-      - name: Set up Python 3.11
+      - name: Set up Python 3.12
         uses: actions/setup-python@v2
         with:
-          python-version: 3.11
+          python-version: 3.12
 
       - name: Lint
         run: |

.github/workflows/notebooks.yml

@@ -23,7 +23,7 @@ jobs:
           - uses: conda-incubator/setup-miniconda@v2
             with:
               auto-update-conda: true
-              python-version: "3.10"
+              python-version: "3.12"
               channels: conda-forge
               channel-priority: true
 

.github/workflows/prerelease.yml

@@ -24,10 +24,10 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
-      - name: Set up Python 3.9
+      - name: Set up Python 3.12
         uses: actions/setup-python@v2
         with:
-          python-version: "3.9"
+          python-version: "3.12"
 
       - name: Install twine
         run: |

.github/workflows/release.yml

@@ -24,10 +24,10 @@ jobs:
 
     steps:
       - uses: actions/checkout@v2
-      - name: Set up Python 3.9
+      - name: Set up Python 3.12
         uses: actions/setup-python@v2
         with:
-          python-version: "3.9"
+          python-version: "3.12"
 
       - name: Install twine
         run: |

.github/workflows/test.yml

@@ -20,7 +20,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ["3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12"]
 
     steps:
       - uses: actions/checkout@v2
@@ -39,11 +39,13 @@ jobs:
         run: pip install nox
 
       - name: Test
-        run: nox -s test
+        run: |
+          nox -s test --force-pythons="${{ matrix.python-version }}" -- -m "${{ matrix.pytest-marker }}"
 
       - name: Test the cli
-        run: nox -s test-cli
+        run: |
+          nox -s test-cli --force-pythons="${{ matrix.python-version }}" -- -m "${{ matrix.pytest-marker }}"
 
       - name: Coveralls
-        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11'
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
         uses: AndreMiras/coveralls-python-action@v20201129

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/psf/black
-  rev: 23.9.1
+  rev: 23.11.0
   hooks:
   - id: black
     name: black
@@ -26,7 +26,7 @@ repos:
   rev: 1.7.0
   hooks:
     - id: nbqa-pyupgrade
-      args: ["--py38-plus"]
+      args: ["--py310-plus"]
     - id: nbqa-isort
     - id: nbqa-flake8
       args: ["--extend-ignore=E402"]
@@ -48,7 +48,7 @@ repos:
         - flake8-simplify
 
 - repo: https://github.com/asottile/pyupgrade
-  rev: v3.10.1
+  rev: v3.15.0
   hooks:
   -   id: pyupgrade
       args: [--py38-plus]
@@ -60,7 +60,7 @@ repos:
       files: \.py$
 
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.4.0
+  rev: v4.5.0
   hooks:
     - id: check-builtin-literals
     - id: check-added-large-files
@@ -89,7 +89,7 @@ repos:
       additional_dependencies: [".[toml]"]
 
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: v1.5.1
+  rev: v1.7.0
   hooks:
   - id: mypy
     additional_dependencies: [types-all]

news/79.misc

@@ -0,0 +1,3 @@
+
+Added support for Python 3.12 and dropped support for Python version older
+than 3.10.

noxfile.py

@@ -5,6 +5,7 @@
 
 import nox
 
+PYTHON_VERSION = "3.12"
 PROJECT = "sequence"
 ROOT = pathlib.Path(__file__).parent
 
@@ -18,7 +19,7 @@
 }
 
 
-@nox.session
+@nox.session(python=PYTHON_VERSION, venv_backend="conda")
 def test(session: nox.Session) -> None:
     """Run the tests."""
     session.install("-r", "requirements-testing.in")
@@ -30,7 +31,7 @@ def test(session: nox.Session) -> None:
     session.run("pytest", *args)
 
 
-@nox.session(name="test-notebooks")
+@nox.session(name="test-notebooks", python=PYTHON_VERSION, venv_backend="conda")
 def test_notebooks(session: nox.Session) -> None:
     """Run the notebooks."""
     session.install("nbmake")
@@ -41,7 +42,7 @@ def test_notebooks(session: nox.Session) -> None:
     session.run("pytest", "--nbmake", str(FOLDER["notebooks"]))
 
 
-@nox.session(name="test-cli")
+@nox.session(name="test-cli", python=PYTHON_VERSION, venv_backend="conda")
 def test_cli(session: nox.Session) -> None:
     """Test the command line interface."""
     session.install(".")

pyproject.toml

@@ -14,18 +14,18 @@ maintainers = [
   {name = "Eric Hutton"}
 ]
 keywords = ["sequence", "stratigraphy", "landlab"]
-license = {file = "LICENSE.rst"}
+license = {text = "MIT"}
 classifiers = [
   "Development Status :: 2 - Pre-Alpha",
   "Intended Audience :: Science/Research",
   "License :: OSI Approved :: MIT License",
   "Natural Language :: English",
   "Programming Language :: Python :: 3",
-  "Programming Language :: Python :: 3.8",
-  "Programming Language :: Python :: 3.9",
   "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.10"
 dependencies = [
   "compaction",
   "landlab",
@@ -43,7 +43,7 @@ dynamic = ["readme", "version"]
 homepage = "https://github.com/sequence-dev/sequence"
 documentation = "https://sequence.readthedocs.io"
 repository = "https://github.com/sequence-dev/sequence"
-changelog = "https://github.com/sequence-dev/sequence/blob/develop/CHANGES.rst"
+changelog = "https://github.com/sequence-dev/sequence/blob/develop/CHANGES.md"
 
 [project.optional-dependencies]
 dev = ["nox"]
@@ -55,7 +55,7 @@ sequence = "sequence.cli:sequence"
 packages = ["sequence"]
 
 [tool.setuptools.dynamic]
-readme = {file = ["README.md", "AUTHORS.md"]}
+readme = {file = ["README.md", "AUTHORS.md"], content-type="text/markdown"}
 version = {attr = "sequence._version.__version__"}
 
 [tool.pytest.ini_options]