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add result image
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jingpengw committed Aug 20, 2019
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3 changes: 3 additions & 0 deletions docs/source/tutorial.rst
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Expand Up @@ -178,10 +178,13 @@ You can perform mean affinity segmentation with one single command::

chunkflow read-h5 --file-name affs.h5 -o affs agglomerate --threshold 0.7 --aff-threshold-low 0.001 --aff-threshold-high 0.9999 -i affs -o seg write-tif -i seg -f seg.tif read-tif --file-name image.tif -o image neuroglancer -c image,affs,seg -p 33333 -v 30 6 6

You should be able to see the image, affinity map and segmentation in neuroglancer. Overlay the segmentation with the image looks like this:

|image_seg|

.. |image_seg| image:: _static/image/image_seg.png

If the computation takes too long, you can decrease the ``aff-threshold-high`` to create bigger supervoxels or decrease the ``threshold`` to merge less watershed domains.

Distributed Computation
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