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HTS Compression Benchmarking Suite

This is a set of scripts used for measuring the performance of high-throughput sequencing compression tools (i.e. tools compressing FASTQ or SAM files).

It has been published in Nature Methods (2016).

Tutorials

Please refer to the following documents for a detailed guide how to run benchmarks yourself.

A comprehensive database of available benchmarks is available here.

Contact

In case of questions or problems, feel free to contact me at inumanag at sfu dot oh canada.

License

MIT License

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