SCALCE - Sequence Compression Algorithms using Locally Consistent Encoding
How to install?
In most cases, typing
git clone https://github.com/sfu-compbio/scalce.git cd scalce make download make
should result in a happy
make download will download all necessary dependencies necessary for building SCALCE.
We also recommend that you install pigz and make the
executable reachable via
If this doesn't work, please open a Github issue and we'll try to sort it out.
Variable-length reads (e.g. Pacbio) are not fully supported! There is a limited support (described in documentation); however, it is not tested and is rather buggy. Use caution and make sure to test decompression validity on Pacbio reads!
... is available at http://sfu-compbio.github.io/scalce/.