The Medicago truncatula accession SA27063 (HM078) genome assembly was generated to investigate disease resistance to srping black stem and leaf spot (SBS) disease.

The html file HM078_genome_assembly_associated_code.html contains the code we ran to produce the assembly and conduct comparative genomics analysis of QTL regions.

The vcf file SyRI_A17_vs_HM78_whole-genome_alignment.Chr1-4.vcf.gz contains the VCF file of chromosomes 1 - 4 for SBS-susceptible accession A17 (HM101) vs SBS-resistant accession SA27063 (HM078).

The vcf file SyRI_A17_vs_HM78_whole-genome_alignment.Chr5-8.vcf.gz contains the VCF file of chromosomes 5 - 8 for SBS-susceptible accession A17 (HM101) vs SBS-resistant accession SA27063 (HM078).

The text file SyRI_A17_vs_HM78_whole-genome_alignment.summary.txt contains a summary of the genome-wide structural variants found between A17 (HM101) and SA27063 (HM078).