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This pipleine annotates open access full text articles (dictionary based approach)

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shenay/CellNomenclatureStudy

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CellNomenclatureStudy

This folder contains data generated through the study of usage of cell line/type nomenclature in biomedical literature

Cells_ManualAnalysis.xlsx contains the data generated during the manual analysis of the text mining results

CellLineOnto.mwt is the dictionary generated from the Cell Line Ontology

CellOnto.mwt is the dictionary generated from the Cell Ontology

Cells_Representation_Analysis.V2.xlsx contains the data generated based on the representation of each individual class in literature

Source code of the tagger that can be used with any dictionary in the mwt format to annotate text, is available at https://github.com/jeekim/EuropePMC-Identifier-Extractor

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This pipleine annotates open access full text articles (dictionary based approach)

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