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@shendurelab

Jay Shendure's lab at the University of Washington

Popular repositories Loading

  1. LACHESIS LACHESIS Public

    The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

    C++ 75 33

  2. cfDNA cfDNA Public

    Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA

    Python 55 29

  3. MPRAflow MPRAflow Public

    A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

    Python 28 13

  4. mouse-atac mouse-atac Public

    Repo for website and other code for mouse sci-ATAC-seq project

    Python 27 29

  5. single-cell-ko-screens single-cell-ko-screens Public

    Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hill, McFaline-Figueroa et al.

    R 25 10

  6. MIPGEN MIPGEN Public

    One stop MIP design and analysis

    C++ 22 19

Repositories

Showing 10 of 25 repositories
  • Human-RA-Gastruloid Public

    Code relevant for analysis of human RA gastruloids

    shendurelab/Human-RA-Gastruloid’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 18, 2024
  • MMCA Public

    The scripts used for performing data analysis in the MMCA project

    shendurelab/MMCA’s past year of commit activity
    R 2 MIT 0 1 0 Updated Jun 12, 2024
  • scQers Public

    Scripts, plasmid maps, and amplicon maps for: Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters

    shendurelab/scQers’s past year of commit activity
    R 3 MIT 1 0 1 Updated May 20, 2024
  • MPRAflow Public

    A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data

    shendurelab/MPRAflow’s past year of commit activity
    Python 28 Apache-2.0 13 11 2 Updated Jan 24, 2024
  • ENGRAM Public
    shendurelab/ENGRAM’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 3, 2024
  • shendurelab/Prime-del’s past year of commit activity
    Python 3 MIT 2 0 0 Updated Sep 26, 2023
  • shendurelab/ptolemy-ui’s past year of commit activity
    Vue 0 1 0 0 Updated Jul 20, 2022
  • shendurelab/ptolemy-api’s past year of commit activity
    Python 0 1 0 0 Updated Jul 20, 2022
  • shendurelab/DNATickerTape’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 4, 2022
  • mmca-website Public

    Interactive 3D visualization for mouse mutant cell x gene data

    shendurelab/mmca-website’s past year of commit activity
    JavaScript 1 1 0 0 Updated Apr 25, 2022