v3.8.1

shengqh · Dec 29, 2014 · 266348d · 266348d
1 parent b974a92
commit 266348d
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Showing 4 changed files with 15 additions and 3 deletions.
diff --git a/MiscOptions.xml b/MiscOptions.xml
@@ -325,7 +325,7 @@
       <formatName>AB_SCIEX_MS_Converter</formatName>
       <formatID>33200</formatID>
       <GUInameIndex>200</GUInameIndex>
-      <formatSample>Locus:1.1.1.584.2</formatSample>
+      <formatSample>Locus:1.1.1.584.2 File:"MyRawFile.mgf"</formatSample>
       <regex>Locus:</regex>
       <!--   -->
       <parseItem>
@@ -351,7 +351,7 @@
       <!--   -->
       <parseItem>
         <itemName>rawFile</itemName>
-        <regularExpression>File:\"(.+).wiff\"</regularExpression>
+        <regularExpression>File:[\\]{0,1}\"(.+).wiff[\\]{0,1}\"</regularExpression>
         <slope>1.0</slope>
         <offset>0.0</offset>
       </parseItem>

diff --git a/Properties/RcpaToolsAssembly.cs b/Properties/RcpaToolsAssembly.cs
@@ -15,6 +15,6 @@ static class RcpaToolsAssembly
   internal const string Author = "Quanhu SHENG";
   internal const string Company = "RCPA/CQS";
   internal const string Copyright = "Copyright (C) 2006-2014 " + Company;
-  internal const string Version = "3.8.0";
+  internal const string Version = "3.8.1";
   internal const string InformationalVersion = Version;
 }
diff --git a/RCPA.Tools.csproj b/RCPA.Tools.csproj
@@ -142,6 +142,14 @@
       <Link>template\DetectSignificantIon.r</Link>
       <CopyToOutputDirectory>Always</CopyToOutputDirectory>
     </None>
+    <None Include="..\RCPA.Proteomics\template\MultiplePairQuantification.r">
+      <Link>template\MultiplePairQuantification.r</Link>
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </None>
+    <None Include="..\RCPA.Proteomics\template\PairQuantification.r">
+      <Link>template\PairQuantification.r</Link>
+      <CopyToOutputDirectory>Always</CopyToOutputDirectory>
+    </None>
     <None Include="..\RCPA.Proteomics\template\QuantificationMedian.r">
       <Link>template\QuantificationMedian.r</Link>
     </None>

diff --git a/README.md b/README.md
@@ -60,6 +60,10 @@ The c# source code is also provided at following repositories. Visual Studio 201
 <a name="Changes"/>
 #Changes
 
+2014/12/29 Version 3.8.1
+Enhanced: O18 Quantification Suite: filter outliers before linear regression.
+Enhanced: SILAC Quantification Viewer: filter protein/peptide quantification result using R square. Only protein/peptide passed R square filter will be exported.
+
 2014/12/23 Version 3.8.0 (IMPORTANT)
 Bugfix: Isobaric Labelling Protein Statistic Builder 1.2.2 : R code error for quantify protein using Sum method. If you used 1.2.0, you need to rerun the analysis.