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Profiling output table interpretation #22
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Thanks for using KMCP.
The real genome in samples may match more than one reference, we can't tell which one is the truth. But the similarity score (column
First, the coverage (column |
thank you for the swift reply, if we have several refs with a score of 100 what would be the second metric to use to filter them? would coverage be a good one to use? |
I think so. |
Dear Shenwei,
Thank you very much for your very nice tool, we are trying to understand how to interpret the output table in KMCP format.
If the output table contains more than one ref per species based on which parameter should we choose the best hit?
According to your manual the percentage column refers to Relative abundance of the reference however, we are not sure how this value is calculated. Could you give us more details about this metric?
thank you very much,
best,
Loïc
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