The pipeline consists of a series of scripts that ultimately characterizes a given motif with the nearest closest gene downstream from the position, protein product, and the CDS, with respect to each hit per a given bacterial genome.
Usage example:
python wrapper.py -g FullEColi.gbff -r ResultsFile -m ATCGTGT
Written by: Alister D'Costa (adcosta17) and Kim Nguyen (sherbert-lemon).