Code for "Global spatiotemporal structure and its deviations of neural activities in mice: a resting-state waves perspective"

Dependencies

• Python.
• Python packages in "requirements.txt".

How to run it

• Install Python.
• Install all required Python packages using something like pip install -r requirements.txt.
• Download all .npy files on huggingface and place them in demodata directory. These files are sample data.
• You can just run python demo.py to get a demo result. Or if you prefer jupyter, simply open demo.ipynb.

Please refer to demo.ipynb for instructions on how to execute the code on your data and to view the expected outputs. Please note that lines 24 to 26 in demo.py may take a few minutes to execute, so please be patient.

Tested on

• Arch Linux (6.4.10-arch1-1).
• Python 3.11.3.
• At least 128G memory if you want compute FC of all pixel pairs (using rsfc.full_image_pipeline function).